Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181898g00001 ATGGAGGACTTCTATGGCTTCCACTACACATCACAAGACGAATACCTCTCTTACTCCCACCACTACGCACCACCACCAATACCATCACCACCACCACCACCTCTTCTAAAACTACTTTCAACTACCAAACCTACTAATTTCTTGATGAAGCACCAACAATTACAAGAAGTAGAAGAAGAGGATGAGGTTTCTAATATTGCAGCAAAAATAAAAGTAGCTTCTCATCCACTTTTTCCCCAGCTTCTCCATGCTCACATCGATTTTCAAAAGGTGGGCGCCACGGCGGAGATGGCGGCGGAGCAATTAGAGGATACTATTATTGGCATACATAATCAAATAATACCTAATAACTTGTCTTCTTCTGATGATCCTGTTCCTGATCCTGATCCTGAGCTTGATCATTTCATGGAAACGTATTGCAATATGTTGGGAAAGTTGAAGGATGATATTTCAAGGCCTTTTGAAGAAGCAAAGGCTTTCCTCAACCACATGGAAACACACCTCAACTCCATCGTCCTCTCCAACAACATCTTTGATAATGAAGTAATTACTGGATCATCTAAAAAGTGTTTGCACAATGAAAATGATGATCAGAAAGAGAGAAATATTATTAATCAACATCATCAAGACCTAAAGGGAGACCTTCTAAGAAGATATAGTGGGTACATTACTAATCTGAAGCATGAATTCTCCAAAAACAAGAAGAAAGAAAGGTTACCCAATGAAGCAAAGCAAATATTACTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCAACGTGCAGGATGCAGATAAGGTTGCCCTAG 810 0.3988 MEDFYGFHYTSQDEYLSYSHHYAPPPIPSPPPPPLLKLLSTTKPTNFLMKHQQLQEVEEEDEVSNIAAKIKVASHPLFPQLLHAHIDFQKVGATAEMAAEQLEDTIIGIHNQIIPNNLSSSDDPVPDPDPELDHFMETYCNMLGKLKDDISRPFEEAKAFLNHMETHLNSIVLSNNIFDNEVITGSSKKCLHNENDDQKERNIINQHHQDLKGDLLRRYSGYITNLKHEFSKNKKKERLPNEAKQILLAWWNIHFKWPYPTCRMQIRLP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181898g00001 269 ProSiteProfiles ELK domain profile. 210 230 IPR005539 GO:0003677
Stsc181898g00001 269 SMART ELK_2 131 151 IPR005539 GO:0003677
Stsc181898g00001 269 SMART ELK_2 210 231 IPR005539 GO:0003677
Stsc181898g00001 269 Pfam ELK domain 210 231 IPR005539 GO:0003677
Stsc181898g00001 269 Pfam KNOX2 domain 128 171 IPR005541 GO:0003677|GO:0005634
Stsc181898g00001 269 SMART KNOX1_2 66 111 IPR005540 GO:0003677|GO:0005634
Stsc181898g00001 269 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 48 175 - -
Stsc181898g00001 269 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Stsc181898g00001 269 Gene3D - 186 268 - -
Stsc181898g00001 269 Pfam KNOX1 domain 69 99 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181898g00001 Stsc-Chr181898 3729 8905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181898g00001 60 261 Homeobox Transcription Factor Family AT1G23380 41.429 1.25e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181898g00001 - - ccaj:109811765 203.756