Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181893g00012 ATGGAGGTGGAGGAGGGTGATGAAGGGCACACGGTGGAGATTAGCAGCGAGAACTCGGGCCCCACTAGATCGAGATCAGAGGATGATTACTTTGAAGGAGAAGGTGAACATGAAGATGAAGATATTATTATCGGTGATGATGATAACAAAAACAAGAACAAAAAGAAGAGAAAGAAATATCACAGACACACCGCTGACCAGATCAGAGAAATGGAAGCGCTATTCAAAGAGTCTCCACATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAACTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTAGAACCCAAATCAAGGCAATACAAGAGCGACATGAAAACTCATTGTTGAAGACAGAAATAGAGAAGCTAAAGGAGAAAAACAAAGGCTTGAGAGACACCATTAACAAAGCTTGTTGCCCCAACTGTGGTGTTCCAACCACTACACGAGATGGTGCTGCAATGCCAACTGAAGAACAACAACTTCGCATTGAGAATGCCAAACTCAAAGCTGAGGTAGACAAGCTCAGAGGAGCTTTATCCAAATATGGTGGTTCTGCTGCTGCTGCAGCATCATCAACTTCTCCTTCAAGCTCTTCTGGTGGTGGTGGACATGAGCAAGAGAATATTAGAAGCTCGTTGGATTTCTACACAGGCATTTTCGGAGTTGACAAGTCAAGGATAATGGACACAGTTAGCAAGGCTATGGAGGAGCTCATAAAGATGGCAACAATGGGGGAACCCTTGTGGCTTCGTAGCGTTGAGACTGGCCGCGAGATACTCAACTACGATGAGTATATCAAACACTTTGCACCTGAAACTTCTTCTTCTTCGTCATCGTCAACAAAGAGATCCATTATTGAAGCTTCAAGAGACACTGCTCTTGTCTTTGTTGATCTCCCACGCCTTCTCCAAATCTTCCAAGACGCGAATCAGTGGAAGGAAATGTTTCCATGTTTAATATCAAAGGCAGCAACTGTGGATGTTATATGCAATGGAGAAGGTTCTAACAGGGACGGTGCAGTTCAACTGATGTTTGCTGAGGTGCAAATGCTAACACCAATGGTGGGCACAAGAGAAGTGTATTTTGTCCGTTACTCAAAACAGTTGAGTGCAGAACAGTGGGCTTTCATTGATGTATCCATAGACAAAGTAGAAGACAACATTGATGCCTCCCTCGTGAAATGTAGAAAACGCCCCTCTGGTTGCATTATTGAGGACAAGTCAAATGGTCACTGCAAGGTGACATGGGTGGAGCACTTGGAAAGCCAAAAGAGCCCAGTGCCTACAATGTATCGGACCATTGTGAACAGTGGCATGGCCTTTGGTGCAAGGCACTGGCTTACCACTCTCCAGCTTCAGTGCGAGCGTCTTGTTTTCTTCATGGCAACCAATGTTCCCATGAAGGATTCATTAGGTGTTGCGACGTTGGCTGGGAGGAAAAGCATTTTGAAGTTGGCTCAAAGAATGACATGGGGTTTCTGCCATGCAATTGGTGCCTCAAGCTTCCATACATGGACCAAGGTTACAAGTAAAACTGGGGAAGACATTAGGATCAGCTCAAGGAAGAATCTGAACGATCCTGGTGAACCTCTTGGACTGATACTATGTGCTGTTTCCTCTGTGTGGTTACCTGTCTCTCCTAATGTCTTGTTTGATTTCTTGAGGGATGAAACTCGCCGCACTGAGTGGGATATAATGTGCAGTGGTGGCTCTGTTCAGTCCATTGCAAATTTGGGCAAAGGACAAGACCGTGGCAATGCAGTAACCATTCAAACAATAAAATCGAAGGAGAATAGCATGTGGATAGTGCAAGATTGCTGCACAAATGCTTTTGAGTCAATGGTGGTGTATGCTCCTGTGGACATCACTGGCATTCAATCTGTGATGACAGGTTGCGATTCGAGCAATCTGGCCATACTTCCATCAGGATTCTCGATTGTTCATGACGGGATGGAATCAAGGCCTATGGTGATTACTTCAAGACAGGAGGAGAAGAACACAGAAGGAGGATCCTTGTTCACCATAGCATTCCAGATCCTCACTAATGCTTCTCCAACAGCCAAGTTAACCATGGAGTCTGTGGACTCGGTCAACACTCTCTTATCTTGTACTTTGAGAAATATCAGAACAAGTTTACAATGCGAAGATGGTTAA 2175 0.4483 MEVEEGDEGHTVEISSENSGPTRSRSEDDYFEGEGEHEDEDIIIGDDDNKNKNKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLKEKNKGLRDTINKACCPNCGVPTTTRDGAAMPTEEQQLRIENAKLKAEVDKLRGALSKYGGSAAAAASSTSPSSSSGGGGHEQENIRSSLDFYTGIFGVDKSRIMDTVSKAMEELIKMATMGEPLWLRSVETGREILNYDEYIKHFAPETSSSSSSSTKRSIIEASRDTALVFVDLPRLLQIFQDANQWKEMFPCLISKAATVDVICNGEGSNRDGAVQLMFAEVQMLTPMVGTREVYFVRYSKQLSAEQWAFIDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLESQKSPVPTMYRTIVNSGMAFGARHWLTTLQLQCERLVFFMATNVPMKDSLGVATLAGRKSILKLAQRMTWGFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSPNVLFDFLRDETRRTEWDIMCSGGSVQSIANLGKGQDRGNAVTIQTIKSKENSMWIVQDCCTNAFESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIVHDGMESRPMVITSRQEEKNTEGGSLFTIAFQILTNASPTAKLTMESVDSVNTLLSCTLRNIRTSLQCEDG 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181893g00012 724 Pfam Homeodomain 57 112 IPR001356 GO:0003677
Stsc181893g00012 724 Gene3D - 43 127 - -
Stsc181893g00012 724 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Stsc181893g00012 724 ProSiteProfiles START domain profile. 227 466 IPR002913 GO:0008289
Stsc181893g00012 724 SUPERFAMILY Homeodomain-like 47 115 IPR009057 -
Stsc181893g00012 724 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 55 719 IPR042160 -
Stsc181893g00012 724 MobiDBLite consensus disorder prediction 193 214 - -
Stsc181893g00012 724 CDD START_ArGLABRA2_like 231 462 - -
Stsc181893g00012 724 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Stsc181893g00012 724 MobiDBLite consensus disorder prediction 1 68 - -
Stsc181893g00012 724 FunFam Homeobox-leucine zipper protein HDG1 44 130 - -
Stsc181893g00012 724 Pfam START domain 240 463 IPR002913 GO:0008289
Stsc181893g00012 724 SMART START_1 236 463 IPR002913 GO:0008289
Stsc181893g00012 724 Gene3D - 285 463 IPR023393 -
Stsc181893g00012 724 SMART HOX_1 56 118 IPR001356 GO:0003677
Stsc181893g00012 724 CDD homeodomain 61 112 IPR001356 GO:0003677
Stsc181893g00012 724 SUPERFAMILY Bet v1-like 230 463 - -
Stsc181893g00012 724 Coils Coil 165 185 - -
Stsc181893g00012 724 FunFam Homeobox-leucine zipper protein GLABRA 2 236 462 - -
Stsc181893g00012 724 SUPERFAMILY Bet v1-like 496 709 - -
Stsc181893g00012 724 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181893g00012 Stsc-Chr181893 26686 32055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181893g00012 14 723 Homeobox Transcription Factor Family AT1G79840 63.357 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc181893g00012 START 3.3e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181893g00012 K09338 - gmx:100809926 1137.48