Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181892g00002 ATGGAATTGCCAAACGGCGGCGTCATCACCAAAGCAGAGTCACAAAGCAAAGAAAGACTTGCAATTTTCGAACTGGCACACATGATTAGTGTTCCTATGTCACTGGTCGCCATAATCAAACTGAAAGTGCCACAAACCATTTGGCAACAAGGTTCCAACACTCCTCTCTCCGCTTCGGAAATTATCGCACGTGTGCGTCCCCACGGTAGTAGTAGTAGTGCTACTGCTGCTGATCCACACAATCTTCAACGCATGCTTCGCTTGCTCACAAGCTATAACATCTTTGCTGAGCATCTCAGCGAAAATAATGGTGAGAGGAAGTTTAGCCTAACCGACATTGGCAAAACTCTTGTTGATGATGATGAAGGTTTATCCTATGCCTATTACATGCTCCAGCATCATGAGGATGCATTGATAAATACTTGGCCATTCGTGGCGGAGGCAGTGGAGGACCCGACGATGGTGCCGTTCAAGAAGGCGAACGGCGACGGAGCCATGAGCTACTACTCCAAACGGCCGAATATGATTAACTTGTTCGGCAAGGCCATGCGTAGTGTATCCGTACCATTCATGAGGGAAATGCTAGAGTCCTATGATGGCTTCAATGGTATTGAATCATTGGTTGATGTTGGTGGCAACTATGGTGACTGTTTGGAAATGATTATGCAAAGGTACCCTAATATCCGTAAGGGCATCAACTTTGATTTGCCTCATGTCGTTGCTCATGCACCACCTCTTCCAGGAATAATCCACGTGGGTGGTGACGCACATGAATTTGTTCCCAGTGGAGATGCTATATTCTTAAAGTGGCTGGTTACAACATCAACGGACGAGGATACCAAGAAGTTGTTTGAGAATTGTTACAAGGCACTTCCAAAGGGAGGGAAATTGATTCTTGTTGAGCCAGTGCTGCCAGAGTCAACGGATGAAAGTCAAAGAACAAGGACATTGCTTGGTGCTGACGTGTACAACATGACAATGTACAACCCTAAAGGGAAGCAGAGAACCGAACAACAATTCAAAGATCTTGCCAATTTTGCTGGGTTCTCTTCTTGCCGTGCCTTCTATGTTGATCCTTTCATGTCTGTTCTTGAGTTTGAGAAATGA 1107 0.4553 MELPNGGVITKAESQSKERLAIFELAHMISVPMSLVAIIKLKVPQTIWQQGSNTPLSASEIIARVRPHGSSSSATAADPHNLQRMLRLLTSYNIFAEHLSENNGERKFSLTDIGKTLVDDDEGLSYAYYMLQHHEDALINTWPFVAEAVEDPTMVPFKKANGDGAMSYYSKRPNMINLFGKAMRSVSVPFMREMLESYDGFNGIESLVDVGGNYGDCLEMIMQRYPNIRKGINFDLPHVVAHAPPLPGIIHVGGDAHEFVPSGDAIFLKWLVTTSTDEDTKKLFENCYKALPKGGKLILVEPVLPESTDESQRTRTLLGADVYNMTMYNPKGKQRTEQQFKDLANFAGFSSCRAFYVDPFMSVLEFEK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181892g00002 368 SUPERFAMILY "Winged helix" DNA-binding domain 17 121 IPR036390 -
Stsc181892g00002 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 368 IPR016461 GO:0008168
Stsc181892g00002 368 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Stsc181892g00002 368 Gene3D Vaccinia Virus protein VP39 123 368 IPR029063 -
Stsc181892g00002 368 Gene3D - 6 122 IPR036388 -
Stsc181892g00002 368 PANTHER O-METHYLTRANSFERASE 25 355 IPR016461 GO:0008168
Stsc181892g00002 368 PIRSF O-mtase 2 368 IPR016461 GO:0008168
Stsc181892g00002 368 Pfam Dimerisation domain 33 90 IPR012967 GO:0046983
Stsc181892g00002 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 365 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181892g00002 Stsc-Chr181892 11986 15776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181892g00002 12 368 Monolignol Biosynthesis Gene Families AT3G53140 56.583 2.17e-150 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181892g00002 - - ccaj:109819366 451.44