Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181889g00007 ATGCAGCAGATCATGGCTACTAGAGTTCTTTCTTCTCTTCGTTCTGTCTCTTCACCTTCTGCTTCACCTTCTATTGGCCTATATTGTCGATGGATTAGAAGTATCAGCGGAATTAGTGCTTCTTCTGCCGCTGAAACTGAACCTGTGACCCCACCAGTGCAAATTGATCATACTCAGCTTTTAATTGATGGAAATTTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACCTTTGATCCAAGAACAGGTGAAGTAATTGCAAATGTTGCTGAAGGTGACAGCGAAGATGTTGACCGTGCAGTCTTTGTTGCACGCCAAGCGTTCGATGAAGGGCCATGGCCAAAGATGACAGCTTATGAAAGGTCACGAATACTATTTCGATTCGCTGATTTATTGGAGAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGACAGTGGAAAGCCTTATGAACAAGCTGCAAATCATGAAATCCCTATGGTGGCTCGAGTGTTTCGATATTATGCAGGTTGGGCAGATAAAATTCACGGGCTAACTGTTCCAGCTGATGGACCACACCATGTGCAAACCTTGCATGAGCCTATTGGAGTAACAGGGCAGATTGTTCCTTGGAATTTTCCTCTTCTTATTTATTCGTGGAAAGTTGCGCCGGCATTAGCCTGCGGTAACACGGTTGTGTTGAAAACTGCAGAGCAGACACCACTCTCAGCACTCATTGTGTCAAAATTATTACTTGAGGCAGGACTTCCTCCTGGTGTACTAAACATCATCTCCGGCTTCGGTCCGACCGCCGGTGCAGCTCTGTGTAGTCACATGAATGTTGACAAGATTGCTTTCACAGGATCCACCGGCACCGGTAAGATTGTTCTAGGACTTTCTGCACAAAGCAATCTAAAGCCGGTGACACTGGAGCTTGGTGGAAAATCTCCCTTCATTGTTTGCAGGGATGCTGATATTGATGTAGCTGTTGAGGCTGCTCATTCTGCCTTGTTCTTTAACCAGGGTCAATGTTGTTGTGCTGGTTCGCGCACATTTGTACATGAAAGCATATATGATGAATTCGTGGAAAAATCAAAAGCTCGAGCCCTTAAACGTGTAGTAGGAGACCCTTTCAGAAGTGGGGTTGATCAAGGTCCTCAGATTGATTCAGTGCAATTTGAGAAGATCCTGAAATACATTAGATCAGGAATTGAAAATGGTGCTAAACTTGAGTCTGGTGGGGAAAGATTTGGCTCCAAAGGCTACTATATCCAACCTACTGTTTTCTCCAATGTTCAGGACAATATGTTGATAGCAAGAGATGAGATCTTTGGTCCAGTACAAACAATCTTGAAATTCAGGGATATAGAGGAAGTGATACACAGAGCAAATTCAACTTCTTATGGCCTTGCTGCTGGAGTCTTTACCAAGTCCATAGACACTGCTAACACATTGATGCGCGCATTGCGAGTTGGGACGGTTTGGATCAACTGTTATGATGTCTTCGACGCAGCGATACCTTTCGGCGGTTACAAGATGAGTGGACAAGGGAGAGTGAGGGGAGTCTATGGCCTTAGCAGCTACCTTCAAGTTAAAGCTGCTGTTACTCCTTTGAGGAATCCAGCATGGTTGTAG 1617 0.4447 MQQIMATRVLSSLRSVSSPSASPSIGLYCRWIRSISGISASSAAETEPVTPPVQIDHTQLLIDGNFVDAASGKTFPTFDPRTGEVIANVAEGDSEDVDRAVFVARQAFDEGPWPKMTAYERSRILFRFADLLEKHNDEVAAIETWDSGKPYEQAANHEIPMVARVFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVTGQIVPWNFPLLIYSWKVAPALACGNTVVLKTAEQTPLSALIVSKLLLEAGLPPGVLNIISGFGPTAGAALCSHMNVDKIAFTGSTGTGKIVLGLSAQSNLKPVTLELGGKSPFIVCRDADIDVAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKSKARALKRVVGDPFRSGVDQGPQIDSVQFEKILKYIRSGIENGAKLESGGERFGSKGYYIQPTVFSNVQDNMLIARDEIFGPVQTILKFRDIEEVIHRANSTSYGLAAGVFTKSIDTANTLMRALRVGTVWINCYDVFDAAIPFGGYKMSGQGRVRGVYGLSSYLQVKAAVTPLRNPAWL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181889g00007 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 526 IPR016162 GO:0016491
Stsc181889g00007 538 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 304 311 IPR029510 GO:0016491
Stsc181889g00007 538 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 62 318 - -
Stsc181889g00007 538 Pfam Aldehyde dehydrogenase family 66 527 IPR015590 GO:0016491
Stsc181889g00007 538 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 42 527 - -
Stsc181889g00007 538 CDD ALDH_F2BC 55 530 - -
Stsc181889g00007 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 497 IPR016163 GO:0016620
Stsc181889g00007 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 332 343 IPR016160 GO:0016491
Stsc181889g00007 538 SUPERFAMILY ALDH-like 54 531 IPR016161 GO:0016491
Stsc181889g00007 538 FunFam Mitochondrial aldehyde dehydrogenase 2 310 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181889g00007 Stsc-Chr181889 22972 27222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181889g00007 5 538 Aldehyde Dehydrogenase Gene Family AT3G48000 72.862 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181889g00007 K00128 - gmx:100798892 904.434