Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181886g00007 ATGTACCATCATCATCAAGGAGGGAATAAGAACATCCATTCTTCAAGTTCAAGAATGGCAATATCTTCTGAGAGGCACATGTTCCTTCAAGCTGCTGCTGCTGCTGGAAATGGGTCCGGGGGTGAGTCTGGGCTTGTGCTCTCCACAGATGCCAAGCCTAGACTGAAATGGACACCAGATCTTCATGCCAGGTTTATAGAAGCAGTTCATCAGCTAGGTGGAGCTGACAAGGCAACTCCAAAAACAGTGATGAAACTCATGGGAATTCCAGGGCTTACCTTATATCATCTCAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATCTACACGGACAAAGTAATAACAACGTCGTGACACACAAAATTAGTGCAAGTAGTGCAACTACTACGGGAGAAAGGCCCTCTGAAAGCAATGACACTCACAATCCTATGAACAACAACACTTTTAACACTGTTGGATTATCTTCTCCTCAGTCATCTAATAATAACAAAGATTTACACATAAGTGAGGCACTGCAGATGCAGATAGAGGTGCAAAGAAGGCTAAATGAACAACTAGAGGTGAGGATAGAGGCACAAGGGAAGTACCTGCAATCAGTGCTGGAGAAAGCTCAGGAAACACTTGGGAGACAGGATTTGGGAGTAGTAGGACTTGAAGCTGCAAAAGTCCAACTCTCTGAGCTTGTTTCCAAAGTTTCGTCTCAGTGCTTGGAACTTCAAACCACCAACAATAACCACTTACCAAATAATAATAACGACTGTTCCATGGACAGTAACAGTTGCCTCACATCAGAACAAGAGAATCTAAGGCGGCCCTTCAATAATAATGGCCACCACCACCACCATGCATTCATGTTGGAGAGAAACAACACTGGCACAACCACCACCAACTTTCTGACACCATTAGGGAGCAAGAACAATAATAATAATAGTAAGAGTGGAGAAAGAAGAAGCTATGTTGTGGAGAGAAGTAGTCCAAGTAACTTGTCTATGAGCATTGGACTTGAAAGGGAGACTGAAGCAGCAGCGATGATGATGAGTAGTAGTGAGAAAGGTTCTCACAATCATCATCATCAAGACTATAGCAGGATGCCACCTTGTTGTTGTTCTTCTTCTTACTTTGCAGCAGCAAGGCTGGACCTTAACGCACGTGATCAGGATCAAATTCATGAAGCAAGTGGTACAACTTGTAAGCAGCTGGACTTGAATGGATTCAGTTGGAGTTAG 1230 0.435 MYHHHQGGNKNIHSSSSRMAISSERHMFLQAAAAAGNGSGGESGLVLSTDAKPRLKWTPDLHARFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNNVVTHKISASSATTTGERPSESNDTHNPMNNNTFNTVGLSSPQSSNNNKDLHISEALQMQIEVQRRLNEQLEVRIEAQGKYLQSVLEKAQETLGRQDLGVVGLEAAKVQLSELVSKVSSQCLELQTTNNNHLPNNNNDCSMDSNSCLTSEQENLRRPFNNNGHHHHHAFMLERNNTGTTTTNFLTPLGSKNNNNNSKSGERRSYVVERSSPSNLSMSIGLERETEAAAMMMSSSEKGSHNHHHQDYSRMPPCCCSSSYFAAARLDLNARDQDQIHEASGTTCKQLDLNGFSWS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181886g00007 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 109 IPR017930 -
Stsc181886g00007 409 FunFam Myb family transcription factor 51 109 - -
Stsc181886g00007 409 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 107 IPR006447 GO:0003677
Stsc181886g00007 409 Coils Coil 170 190 - -
Stsc181886g00007 409 MobiDBLite consensus disorder prediction 125 164 - -
Stsc181886g00007 409 SUPERFAMILY Homeodomain-like 51 107 IPR009057 -
Stsc181886g00007 409 MobiDBLite consensus disorder prediction 294 335 - -
Stsc181886g00007 409 Gene3D - 51 109 - -
Stsc181886g00007 409 Pfam Myb-like DNA-binding domain 54 105 IPR001005 -
Stsc181886g00007 409 Pfam MYB-CC type transfactor, LHEQLE motif 168 208 IPR025756 -
Stsc181886g00007 409 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 335 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181886g00007 Stsc-Chr181886 20857 23653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181886g00007 84 408 G2-like Transcription Factor Family AT5G18240 41.667 5.53e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc181886g00007 Myb_DNA-binding 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181886g00007 - - gmx:100810396 412.149