Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181886g00004 ATGTATAGTAATTTCAAGGAGCAAGCCATAGAGTACGTCAAGCAAGCGGTGCAGGAGGACAACAATGGCAACTACGCCAAGGCCTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAAACCCACCTCAAGTACGAGAAGAACCCTAAAATCAAGGAGGCCATCACGCAGAAATTCACCGAATACCTTCGTCGTGCCGAGGAGATCCGTGCTGTTCTTGATGACGGTGGGCCTGGCCCTGGCTCCAACGGGGACGCCGCCGTTGCCACCAGGCCCAAGACCAAGCCCAAGGACGGAGAAGGAGGCAGCGGAGGTGGGGACGGGGAGGATCCCGAGCAGGCCAAGCTGAGGGCGGGTTTGAATTCTGCAATCATTAGGGAGAAGCCTAACGTCAAGTGGAATGACGTGGCGGGCTTGGAGAGCGCCAAGCAGGCCTTGCAGGAGGCAGTTATCTTGCCCGTCAAGTTTCCTCAATTCTTCACCGGTAAAAGACGCCCTTGGAGAGCATTTTTGTTGTATGGACCACCCGGAACTGGTAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCCACATTTTTCAGTACCCTATCAACCAGTGCTGCCCATCCATAG 621 0.5395 MYSNFKEQAIEYVKQAVQEDNNGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPGSNGDAAVATRPKTKPKDGEGGSGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSTLSTSAAHP 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181886g00004 206 FunFam MIT domain protein 129 163 - -
Stsc181886g00004 206 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Stsc181886g00004 206 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Stsc181886g00004 206 PANTHER AAA DOMAIN-CONTAINING 15 200 - -
Stsc181886g00004 206 MobiDBLite consensus disorder prediction 91 113 - -
Stsc181886g00004 206 SUPERFAMILY MIT domain 2 82 IPR036181 -
Stsc181886g00004 206 Gene3D - 129 200 IPR027417 -
Stsc181886g00004 206 Pfam ATPase family associated with various cellular activities (AAA) 171 198 IPR003959 GO:0005524|GO:0016887
Stsc181886g00004 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 197 IPR027417 -
Stsc181886g00004 206 Gene3D - 6 75 - -
Stsc181886g00004 206 CDD MIT_VPS4 4 77 IPR045253 -
Stsc181886g00004 206 SMART smart 2 79 IPR007330 -
Stsc181886g00004 206 MobiDBLite consensus disorder prediction 72 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181886g00004 Stsc-Chr181886 12500 13956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181886g00004 109 197 Calmodulin-binding Proteins AT3G56690 41.489 1.53e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181886g00004 K12196 - gmx:100806836 367.081