Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181886g00002 ATGCTTACTCCAGAGCAAGCTAATCAACTTCAAGAACATGAATCAGTGGTGTCAGTTTTTGAGAGTAAACTGAATAGGCTCCATACAACACATTCTTGGGATTTTCTTAGATTAAACTATGCCTACACAGGAAGCCATGTGGCAATGGATTGGGCGTCAGATGTTATTGTTGGTGTCGTTGACTCAGGTGTTTGGCCAGAATCAGAAAGCTTCACAGATTATGGATTAGGTCCTGTGCCTCAGAGATTCAAGGGAGAGTGTGTCACTGGTGATAATTTCACACTAGCCAATTGCAATAGGAAAATAATTGGTGCGAGGTTCTATTCAAAAGGTTTTGAAGCAGATGTTGGTCCATTGGACGACGTGGTTAACAGGCAATATTTCAGATCAGCACGAGACAGTGATGGACATGGAAGTCACACAGCCTCCACCATAGCAGGATCCATTGTTGGTAATGCCAGTTTACTTGGCATGGGCAGAGGAAGTGCTCGAGGTGGTGCACCAAATGCAAGGCTTGCCATCTACAAGGCCTGCTGGTTTGGATTCTGCAGCGATGCAGATATCCTGTCTGCCATGGATGATGCCATTCATGATGGTGTTGACATTCTTTCCCTCTCCCTAGGCCCTTCACCTCCACAGCCCATTTACTTTGAGGATGCAGTCAGTGTTGGTGCATTCCATGCTTTCCAAAACAGCATTCTTGTTTCTGCTTCCGCCGGAAACTCCATTTTTCCAGGTACTGCCTGCAATGTTGCTCCTTGGATTCTCACTGTTGCTGCTAGCACCATCGATAGACAATTCAGATCAGACATTTACCTTGGAAATTCTAAAGTATTAAAGGGTCTGTCTTTGAATCCAATAAGAATGGACAACTGGCATGGTTTGATATATGCAAGTGCGGCCGCAGCGGCAGGAGTTCCATCAACAAATGCAAGCTTCTGTAAAAACAATACTCTAGATCCTAGCTTAATAAAAGACAAAATTGTGATCTGTACAATTGAGACATTCTCTGAGAACCGAAGATTGAAGTCTGAGGTAATAAAGGAAGGTGGAGGAGTTGGAATGATACTTATTGATCACAATGCCAGAGATGTTGGGTTTCAGTTTGTGATCCCAACCACTCTCATTGGTCAGGATGCTGTAGATGACCTTCAATCATATATCAACACAGAGAGGAATCCTATTGCTAGAATTTATCCCACAATAACTGTTGTTGATACGAAACCTGCGCCAGAAGTGGCAGCTTTTTCCTCTATGGGGCCAAATCCTGATATCACAGCACCCGGGGTGAATATTCTGGCAGCATGGTCTCCGGTGGCAACCCAAGACACGGTGGAACAACAATCCGTGGACTATAACATCATTTCAGGAACATCAATGGCTTGCCCACACATATCTGCCATTGCTGCAATTATAAAGTCTCACTATCCTTCTTGGAGTCCTGCATCCATAATGTCTGCAATTATGACAACATCAACTGTGATGGACAATACTCGTCGTGTCATTGGAAGAGATCCCAATGATACTCAAACAACACCCTTTGACTATGGATCTGGCCATGTTAACCCACTTGCATCACTAAATCCAGGACTAGTATATGATTTCAACACTCAAGATGTGCTCAAGTTTCTATGTAGCAATGGAGCATCACCAGCACAACTCAAGAACCTTACTATTGGAGGAGAATGTAAGAATTATCCTGAGCCTACAGCTTCCTACAACTTGAACTACCCTTCAATTGGTGTGTCCAAATTGAACGGAAGTTTATCAGTGTATCGCACGGTTACCTTCTACGGCAAGGAAGCAACAGTGTACTATGCAAGTGTTGAAAATCCACAAGGTGTGAATGTTAGAGTAACACCATCTGAACTGAGGTTTGTGAAAGAAGGGGAGAAAGCAAGTTTCAGGATTGATTTGAAGGGTTTGAAGAATAGCAATGGTAATTTTGTTTTCGGTGGCATCACATGGAACAATGGCATACAGAGGATTAGGACTCCCATTGGTGTTAATGTAATCTCTACTTAG 2025 0.4331 MLTPEQANQLQEHESVVSVFESKLNRLHTTHSWDFLRLNYAYTGSHVAMDWASDVIVGVVDSGVWPESESFTDYGLGPVPQRFKGECVTGDNFTLANCNRKIIGARFYSKGFEADVGPLDDVVNRQYFRSARDSDGHGSHTASTIAGSIVGNASLLGMGRGSARGGAPNARLAIYKACWFGFCSDADILSAMDDAIHDGVDILSLSLGPSPPQPIYFEDAVSVGAFHAFQNSILVSASAGNSIFPGTACNVAPWILTVAASTIDRQFRSDIYLGNSKVLKGLSLNPIRMDNWHGLIYASAAAAAGVPSTNASFCKNNTLDPSLIKDKIVICTIETFSENRRLKSEVIKEGGGVGMILIDHNARDVGFQFVIPTTLIGQDAVDDLQSYINTERNPIARIYPTITVVDTKPAPEVAAFSSMGPNPDITAPGVNILAAWSPVATQDTVEQQSVDYNIISGTSMACPHISAIAAIIKSHYPSWSPASIMSAIMTTSTVMDNTRRVIGRDPNDTQTTPFDYGSGHVNPLASLNPGLVYDFNTQDVLKFLCSNGASPAQLKNLTIGGECKNYPEPTASYNLNYPSIGVSKLNGSLSVYRTVTFYGKEATVYYASVENPQGVNVRVTPSELRFVKEGEKASFRIDLKGLKNSNGNFVFGGITWNNGIQRIRTPIGVNVIST 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181886g00002 674 ProSiteProfiles Serine proteases, subtilase domain profile. 32 527 - -
Stsc181886g00002 674 Gene3D - 544 672 - -
Stsc181886g00002 674 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 667 IPR045051 -
Stsc181886g00002 674 Gene3D - 264 405 - -
Stsc181886g00002 674 Pfam Subtilase family 53 246 IPR000209 GO:0006508|GO:0008236
Stsc181886g00002 674 CDD Peptidases_S8_3 27 493 IPR034197 -
Stsc181886g00002 674 PRINTS Subtilisin serine protease family (S8) signature 133 146 IPR015500 -
Stsc181886g00002 674 PRINTS Subtilisin serine protease family (S8) signature 456 472 IPR015500 -
Stsc181886g00002 674 PRINTS Subtilisin serine protease family (S8) signature 52 71 IPR015500 -
Stsc181886g00002 674 ProSitePatterns Serine proteases, subtilase family, serine active site. 457 467 IPR023828 -
Stsc181886g00002 674 Pfam Fibronectin type-III domain 574 669 IPR041469 -
Stsc181886g00002 674 Gene3D Peptidase S8/S53 domain 54 539 IPR036852 GO:0004252|GO:0006508
Stsc181886g00002 674 CDD PA_subtilisin_like 270 398 - -
Stsc181886g00002 674 SUPERFAMILY Subtilisin-like 46 535 IPR036852 GO:0004252|GO:0006508
Stsc181886g00002 674 FunFam Subtilisin-like protease SBT1.5 54 277 - -
Stsc181886g00002 674 Pfam Subtilase family 401 498 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181886g00002 Stsc-Chr181886 6337 9053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181886g00002 2 671 Subtilisin-like Serine Gene Family AT2G04160 42.632 2.27e-170 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181886g00002 - - gmx:100792672 1041.57