Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181884g00003 ATGGATCGGATTAAGGGCCCGTGGAGCCCGGAGGAGGACCAGACGTTGAGGAGGTTGGTGGAAGCCCACGGCCCGAGAAACTGGACTATTATCAGCAAGTCTATACCGGGCCGATCCGGCAAGTCGTGCCGGTTGCGGTGGTGCAACCAGCTGTCACCGGAGGTGGAGCACCGCGCATTCACGGCGGAGGAGGACGATATCATCTTCGGAAACAAGTGGGCCACGATAGCCCGGTTACTTAACGGAAGAACCGATAACGCCGTCAAGAATCACTGGAACTCTACGCTCAAGAGGAAATGCCGCTCTTCTGCTTCTGACGCCGTTACTGTCGCCGTTTACCCCGACGCGCAGCCTCTTAAAAGATCCGCCAGTGTCGGCCCGGGCCATGTTACCACGCCCAGTAGCCCGTCGGGCTCTGAACTCAGCGATCCCGGGCTTCCCTCTCTATCGGCCCCGGGCTCGGATCCAAGAACGTTGCTGAGCTTGTCGCTTCCAGGATCGGGATCAGGATCTGAGTCGACTAAAGACGGGCCTGTGTGTGGGCTTTCACCTGAGCCTGACCCGGCCCAAATGTTCAGCCCGGAGTTCTTGGCGATGATGCAAGAAATGGTGAGGAAAGAGGTTCGGAGTTACATGTCGATGGTTGAACAGAACGGGGTTCGCATTCAGCACACGGAAGCCATTCGAAACGGTGTTATGAAACGAACGGGAATTAGAAACGGTTTAGAGAGGTAA 735 0.5687 MDRIKGPWSPEEDQTLRRLVEAHGPRNWTIISKSIPGRSGKSCRLRWCNQLSPEVEHRAFTAEEDDIIFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCRSSASDAVTVAVYPDAQPLKRSASVGPGHVTTPSSPSGSELSDPGLPSLSAPGSDPRTLLSLSLPGSGSGSESTKDGPVCGLSPEPDPAQMFSPEFLAMMQEMVRKEVRSYMSMVEQNGVRIQHTEAIRNGVMKRTGIRNGLER 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181884g00003 244 MobiDBLite consensus disorder prediction 127 144 - -
Stsc181884g00003 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 100 IPR017930 -
Stsc181884g00003 244 CDD SANT 7 49 IPR001005 -
Stsc181884g00003 244 Gene3D - 58 111 - -
Stsc181884g00003 244 MobiDBLite consensus disorder prediction 154 176 - -
Stsc181884g00003 244 MobiDBLite consensus disorder prediction 119 188 - -
Stsc181884g00003 244 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Stsc181884g00003 244 SMART sant 4 53 IPR001005 -
Stsc181884g00003 244 SMART sant 56 98 IPR001005 -
Stsc181884g00003 244 Gene3D - 4 56 - -
Stsc181884g00003 244 Pfam Myb-like DNA-binding domain 69 95 IPR001005 -
Stsc181884g00003 244 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Stsc181884g00003 244 ProSiteProfiles Myb-like domain profile. 52 96 IPR001005 -
Stsc181884g00003 244 FunFam MYB transcription factor 5 56 - -
Stsc181884g00003 244 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Stsc181884g00003 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Stsc181884g00003 244 PANTHER MYB PROTEIN-RELATED 5 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181884g00003 Stsc-Chr181884 26920 27680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181884g00003 1 220 MYB Transcription Factor Family AT4G37260 49.638 8.21e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181884g00003 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181884g00003 K09422 - gmx:778174 296.204