Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181883g00005 ATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGCGGCGTAGGTGAGCGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTAGCTCTAGTATATGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTCAATGAACAAGATGTACTTTTATTTATCGACAATATCTTCCGCTTCGTACAAGCAGGATCTGAAGTATCTGCTTTATTGGGTCGAATGCCCTCTGCTGTGGGTTATCAACCCACTCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATCACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTAACTGACCCTGCCCCTGCTACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCCGCTAAAGGCTACGAACTTAGAAATGGAGAGCAATTTGAAGAAATGACTTTAAATCTTTGTGTACTGACCCCCAATCGAATTGTTTGGGATTCAGAAGTGAAGGAAATCATTTTACCTACTAATAGCGGACAAATTGGAGTATTACCTAATCATGCGCCTATTGCCTCAGCTGTTGATATAGGTATTTTGAGAATACGTCTTAAAGATCAATGGTTAACAATGGCTCTGATGGGGGGGTTTGCTAGAATAAACAATAATGAGATAACTGTTTTAGTAAATGATGCGGAAAAGGGGAGTGACATTGATCCACAAGAAGCACAGCAAACTCTTGAAATAGCAGAAACTAATTTGAATCAGGCTGAAGGCAAGAGACAAACAATTGAGGCAAATCTAACTCTTAGACGAGCTAGAACACGAGTAGAGGCTATCAATGTTATTTCATAA 969 0.3911 MELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGYELRNGEQFEEMTLNLCVLTPNRIVWDSEVKEIILPTNSGQIGVLPNHAPIASAVDIGILRIRLKDQWLTMALMGGFARINNNEITVLVNDAEKGSDIDPQEAQQTLEIAETNLNQAEGKRQTIEANLTLRRARTRVEAINVIS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181883g00005 322 Gene3D - 278 322 - -
Stsc181883g00005 322 NCBIfam ATP synthase F1 subunit epsilon 191 319 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc181883g00005 322 Gene3D - 190 276 IPR036771 -
Stsc181883g00005 322 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 192 270 IPR020546 GO:0015986
Stsc181883g00005 322 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 190 271 IPR036771 -
Stsc181883g00005 322 PANTHER ATP SYNTHASE 1 179 - -
Stsc181883g00005 322 FunFam ATP synthase epsilon chain, chloroplastic 190 276 - -
Stsc181883g00005 322 Gene3D - 1 180 - -
Stsc181883g00005 322 CDD F1-ATPase_delta 192 312 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc181883g00005 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 179 IPR027417 -
Stsc181883g00005 322 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 4 178 IPR000194 GO:0005524
Stsc181883g00005 322 Hamap ATP synthase epsilon chain [atpC]. 190 317 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc181883g00005 322 Coils Coil 285 305 - -
Stsc181883g00005 322 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 275 318 IPR020547 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181883g00005 Stsc-Chr181883 20181 21570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181883g00005 16 179 Primary Pumps ATPases(2) AT1G78900 29.885 1.45e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181883g00005 K02112 - gmx:3989272 347.436