Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181882g00003 ATGGCATTTAAGGAATCAGTGGTGGAACTTTCATTATCATCACCATCCTCACAACTAGATGCTGCTCAAACCCTTAACAGTGCAAATGCAAGTTCTATCAATCGTGAAACCTTTTACCTCAAACTCACTCACTTGCTCGATTCCTCTGGATTTAGCCTTATTTTCAATGTCCGAGAAACATTGCTGGATTTGTACCTAGTTTACTTGGAGGTGACCACAAGAGGAGGATTCAATCAGGTTAGTCGAGAAAAGAAATGGGGCGAAGTCGCCTCGGCCCTGAGATTGGAAGGAAACAATGCAAGGTTATCTGCTCAAGTTGAAAAGCTCTACTCACAACTTCTTTACCAATTTGAGCAATTGTACTTCTACAGGGCTCCTGCAAAGAGCAGCAAGACCACGGGTTCGCAGAAGAGGAAGCGAAATTCAGAGGCTACTTACTTCTCGTCCGAACCGATAGAAGAAGCAGCAGGGCTGGTCAAAGAGCAAGCTATTATAATCGGAACTTCGGATGGAAAAGAAAAGAAAAAGCGCCGAGGCATGGCGCAAGGACAAAGGAGCGCATACCACATCTTCCTGAAGCAAGAATGCACTCGGCTGAAAAGTTGTAGCTCGGCCTCGGACCGAAAGGGTGTTCTCCGTGCAGCGGTCGATGCATGGAGGAAATTGTCTCCACTTGAGAAACAGCCATATGTGGATGAGTCCAAGAAGAACAAGGAAAAGTTTAAGAATGCAATGATTATTGATGACAATGAGAAGGAAGAGAAGAACATAGCTTCCACTAATGTGTGTAGTGGTGAGTACTACCAAGTAACTTCACAACCTGAACCAGATGACAATGGCTACACTCTCAACAACAATGCAGCAATAGGCTTAGCTTTAAATGTGACTGAAAAGCTTCCCAAGGATTCCTTGTTACTCTTTGGGTTAGAGCATTATTGTTCAATGGACTTTCCAATCATGGAACCAAAGTAA 972 0.4393 MAFKESVVELSLSSPSSQLDAAQTLNSANASSINRETFYLKLTHLLDSSGFSLIFNVRETLLDLYLVYLEVTTRGGFNQVSREKKWGEVASALRLEGNNARLSAQVEKLYSQLLYQFEQLYFYRAPAKSSKTTGSQKRKRNSEATYFSSEPIEEAAGLVKEQAIIIGTSDGKEKKKRRGMAQGQRSAYHIFLKQECTRLKSCSSASDRKGVLRAAVDAWRKLSPLEKQPYVDESKKNKEKFKNAMIIDDNEKEEKNIASTNVCSGEYYQVTSQPEPDDNGYTLNNNAAIGLALNVTEKLPKDSLLLFGLEHYCSMDFPIMEPK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181882g00003 323 Gene3D - 16 143 IPR036431 GO:0003677
Stsc181882g00003 323 SUPERFAMILY ARID-like 27 124 IPR036431 GO:0003677
Stsc181882g00003 323 ProSiteProfiles ARID domain profile. 32 122 IPR001606 GO:0003677
Stsc181882g00003 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 149 277 - -
Stsc181882g00003 323 SUPERFAMILY HMG-box 171 245 IPR036910 -
Stsc181882g00003 323 SMART bright_3 33 123 IPR001606 GO:0003677
Stsc181882g00003 323 Coils Coil 92 112 - -
Stsc181882g00003 323 SMART ARID_2 29 118 - -
Stsc181882g00003 323 Pfam ARID/BRIGHT DNA binding domain 35 118 IPR001606 GO:0003677
Stsc181882g00003 323 CDD HMG-box_SF 185 241 - -
Stsc181882g00003 323 Gene3D High mobility group box domain 167 246 IPR036910 -
Stsc181882g00003 323 Pfam HMG-box domain 182 245 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181882g00003 Stsc-Chr181882 10209 13248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181882g00003 34 260 ARID Transcription Factor Family AT3G13350 23.022 2.63e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc181882g00003 ARID 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181882g00003 - - aip:107615356 432.95