Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181882g00002 ATGTTGGGTTCATCTTCTCGAAATACTGGATCGGTTGCCTCAAGGCGGGATACTCTTTCTTTTGATAATGCAAGAAGTACTTCTGGACAGTATAATGATCCGTTCAGCCGTGTGACTAGTAGTTTTGTTTCTGAAGATGTCCCTGATGCTGCGTCTGAGAAAGATCTGGGTAATGAGTATTTCAAGCAAAAAAAATATAAGGAAGCTATTGACTGCTATTCAAGAAGCATTGCCTTTTCACCCACAGCTGTAGCATATGCAAATAGAGCAATGGCCTATATCAAGCTCAGAAGATTCCAAGAGGCTGACGATGACTGTACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACATCTAGAAAAGAACTTGGGAAATTTAAAGAATCCATGGAGGATGCTGAGTTTGCCTTAAGGTTGGAACCTAACAATCAAGAAATCAAAAAGCAGTATGCTGATGCCAAGTCTTTGTATGACAAAGAAATGCTTCATAAAGTATCTGGAGCTCTGAAAAGCACTGTACAGGGAACTCAAAAAGTAGGGAAATCGGACACACAAAATAATGGAGGCAGCATCCAACCCATTTCTCTTGTTACTCAAAAGTCTGGTCCAGCTAAGGGTAGTGAGCAGCAAATTCCAGCTAAAGAGTCATACTTAATGGAGGAGGTAGATAGTAAGTCTAATAAAACCATAAGCAGGGCTCAGGGACAAGAGGCAGATGGTTCTAATGCAAGCAACAATGTGCAGCATTTTAAGGGAAATCAGAAAGGTAGTAAGCAGCACATGCAAGAATCTATTCAACAGCTTGCTTCTCGTGCAGCTTCTCTAGCTACGGCTGAAGCTGCAAAGAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGGGTTTTCAGGTGATCGTTCTTTGCAGATTCAAGTATTAAAGGCCATATCTCCTCAACAATTACCAAAAATATTCAAAAATGCCCTCTCTACTGCCATGCTGACTGACATCATCAAGTGTGTTGCATCTTTTTTCTCGGAAGAAATGGAGCTAGCTGTCAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACATGATTGTAATGTGCCTTCCATCAACGGATAAAGATGACTTACGCAAGATCTGGGATGAAGTGTTCTGTGGTGAGGCAACCCCGATGGAGTTTGCTGAGATTCTGGACAACCTGCGAACAAAATACTGCCTTGGGCAGTAG 1254 0.4195 MLGSSSRNTGSVASRRDTLSFDNARSTSGQYNDPFSRVTSSFVSEDVPDAASEKDLGNEYFKQKKYKEAIDCYSRSIAFSPTAVAYANRAMAYIKLRRFQEADDDCTEALNLDDRYIKAYSRRATSRKELGKFKESMEDAEFALRLEPNNQEIKKQYADAKSLYDKEMLHKVSGALKSTVQGTQKVGKSDTQNNGGSIQPISLVTQKSGPAKGSEQQIPAKESYLMEEVDSKSNKTISRAQGQEADGSNASNNVQHFKGNQKGSKQHMQESIQQLASRAASLATAEAAKNITPPTTAYQFEVSWRGFSGDRSLQIQVLKAISPQQLPKIFKNALSTAMLTDIIKCVASFFSEEMELAVSYMEHLTKVPRFDMIVMCLPSTDKDDLRKIWDEVFCGEATPMEFAEILDNLRTKYCLGQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181882g00002 417 PANTHER OS05G0129900 PROTEIN 23 416 - -
Stsc181882g00002 417 ProSiteProfiles TPR repeat profile. 50 83 IPR019734 GO:0005515
Stsc181882g00002 417 MobiDBLite consensus disorder prediction 179 213 - -
Stsc181882g00002 417 SMART tpr_5 50 83 IPR019734 GO:0005515
Stsc181882g00002 417 SMART tpr_5 117 150 IPR019734 GO:0005515
Stsc181882g00002 417 SMART tpr_5 84 116 IPR019734 GO:0005515
Stsc181882g00002 417 Pfam Tetratricopeptide repeat 54 82 IPR001440 GO:0005515
Stsc181882g00002 417 MobiDBLite consensus disorder prediction 179 273 - -
Stsc181882g00002 417 Pfam Tetratricopeptide repeat 85 113 IPR019734 GO:0005515
Stsc181882g00002 417 Pfam Potential Monad-binding region of RPAP3 293 382 IPR025986 -
Stsc181882g00002 417 MobiDBLite consensus disorder prediction 1 36 - -
Stsc181882g00002 417 MobiDBLite consensus disorder prediction 235 273 - -
Stsc181882g00002 417 SUPERFAMILY TPR-like 44 162 IPR011990 GO:0005515
Stsc181882g00002 417 ProSiteProfiles TPR repeat profile. 117 150 IPR019734 GO:0005515
Stsc181882g00002 417 Gene3D Tetratricopeptide repeat domain 40 148 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181882g00002 Stsc-Chr181882 3875 9169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181882g00002 54 146 U-box Gene Family AT3G07370 30.851 1.08e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181882g00002 K23002 - gmx:100784528 566.229