Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181882g00001 ATGGATTTCAAGGGTTTCCTAAACGACTTGCAGGATTGGGAACTTTCTCGAAAACACAAAGAAGCTACACACACGAACAAAAACCCTCAAAAGGAAAATGGTTCATCTTCTCGAAATACTGGATCGGTTGCCTCAAGGCGGGATACTCTTTCTTTTGATAATGCAAGAAGTACTTCTGGACAGTATAATGATCCGTTCAGCCGTGTGACTAGTAGTTTTGTTTCTGAAGATGTCCCTGATGCTGCGTCTGAGAAAGATCTGGGTAATGAGTATTTCAAGCAAAAAAAATATAAGGAAGCTATTGACTGCTATTCAAGAAGCATTGCCTTTTCACCCACAGCTGTAGCATATGCAAATAGAGCAATGGCCTATATCAAGCTCAGAAGATTCCAAGAGGCTGACGATGACTGTACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACATCTAGAAAAGAACTTGGGAAATTTAAAGAATCCATGGAGGATGCTGAGTTTGCCTTAAGGTTGGAACCTAACAATCAAGAAATCAAAAAGCAGTATGCTGATGCCAAGTCTTTGTATGACAAAGAAATGCTTCATAAAGTATCTGGAGCTCTGAAAAGCACTGTACAGGGAACTCAAAAAGTAGGGAAATCGGACACACAAAATAATGGAGGCAGCATCCAACCCATTTCTCTTGTTACTCAAAAGTCTGGTCCAGCTAAGGGTAGTGAGCAGCAAATTCCAGCTAAAGAGTCATACTTAATGGAGGAGGTAGATAGTAAGTCTAATAAAACCATAAGCAGGGCTCAGGGACAAGAGGCAGATGGTTCTAATGCAAGCAACAATGTGCAGCATTTTAAGGGAAATCAGAAAGGTAGTAAGCAGCACATGCAAGAATCTATTCAACAGCTTGCTTCTCGTGCAGCTTCTCTAGCTACGGCTGAAGCTGCAAAGAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGGGTTTTCAGGTGATCGTTCTTTGCAGATTCAAGTATTAAAGGCCATATCTCCTCAACAATTACCAAAAATATTCAAAAATGCCCTCTCTACTGCCATGCTGACTGACATCATCAAGTGTGTTGCATCTTTTTTCTCGGAAGAAATGGAGCTAGCTGTCAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACATGATTGTAATGTGCCTTCCATCAACGGATAAAGATGACTTACGCAAGATCTGGGATGAAGTGTTCTGTGGTGAGGCAACCCCGATGGAGTTTGCTGAGATTCTGGACAACCTGCGAACAAAATACTGCCTTGGGCAGTAG 1347 0.418 MDFKGFLNDLQDWELSRKHKEATHTNKNPQKENGSSSRNTGSVASRRDTLSFDNARSTSGQYNDPFSRVTSSFVSEDVPDAASEKDLGNEYFKQKKYKEAIDCYSRSIAFSPTAVAYANRAMAYIKLRRFQEADDDCTEALNLDDRYIKAYSRRATSRKELGKFKESMEDAEFALRLEPNNQEIKKQYADAKSLYDKEMLHKVSGALKSTVQGTQKVGKSDTQNNGGSIQPISLVTQKSGPAKGSEQQIPAKESYLMEEVDSKSNKTISRAQGQEADGSNASNNVQHFKGNQKGSKQHMQESIQQLASRAASLATAEAAKNITPPTTAYQFEVSWRGFSGDRSLQIQVLKAISPQQLPKIFKNALSTAMLTDIIKCVASFFSEEMELAVSYMEHLTKVPRFDMIVMCLPSTDKDDLRKIWDEVFCGEATPMEFAEILDNLRTKYCLGQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181882g00001 448 Pfam Tetratricopeptide repeat 85 113 IPR001440 GO:0005515
Stsc181882g00001 448 MobiDBLite consensus disorder prediction 17 48 - -
Stsc181882g00001 448 MobiDBLite consensus disorder prediction 210 244 - -
Stsc181882g00001 448 MobiDBLite consensus disorder prediction 210 303 - -
Stsc181882g00001 448 Pfam Potential Monad-binding region of RPAP3 324 413 IPR025986 -
Stsc181882g00001 448 Gene3D Tetratricopeptide repeat domain 71 179 IPR011990 GO:0005515
Stsc181882g00001 448 ProSiteProfiles TPR repeat profile. 148 181 IPR019734 GO:0005515
Stsc181882g00001 448 MobiDBLite consensus disorder prediction 28 48 - -
Stsc181882g00001 448 PANTHER OS05G0129900 PROTEIN 1 447 - -
Stsc181882g00001 448 MobiDBLite consensus disorder prediction 266 303 - -
Stsc181882g00001 448 SMART tpr_5 81 114 IPR019734 GO:0005515
Stsc181882g00001 448 SMART tpr_5 148 181 IPR019734 GO:0005515
Stsc181882g00001 448 SMART tpr_5 115 147 IPR019734 GO:0005515
Stsc181882g00001 448 Pfam Tetratricopeptide repeat 116 144 IPR019734 GO:0005515
Stsc181882g00001 448 SUPERFAMILY TPR-like 75 193 IPR011990 GO:0005515
Stsc181882g00001 448 ProSiteProfiles TPR repeat profile. 81 114 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181882g00001 Stsc-Chr181882 3875 9169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181882g00001 42 185 Calmodulin-binding Proteins AT3G25230 26.250 1.37e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181882g00001 K23002 - gmx:100784528 597.816