Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181881g00003 ATGGGTCATGGAGAAAAGATCAGTCCAAGGAGCTTCCATTTGCATCGCCACCTTCTCCAACATCATCATCAACATGGTGAGAAGAACAACAACAGCAACAGCAACAAAGAGTTTAAGGATGTTATCCCAAAAGGTTTCATGGCAATTAAGGTAGGTCAAGGTGAAGAACAACAAAGGTTTGTTGTGCCTGTTATATACTTCAACCACCCTCTCTTCATGCAACTATTGAAGGAAGCTGAAGAAGAGTATGGTTTTGATCAGAAAGGAACCATAACTATACCTTGCCATGTTGAAGAATTCAGGAACATTAGGGGCTTGATTGATAGGGAAAAGAGTTTCCATCATCATCATCATCATCATCATCATCACCATCACCATGTTGGTTGCTTTGGTTTTTAA 399 0.401 MGHGEKISPRSFHLHRHLLQHHHQHGEKNNNSNSNKEFKDVIPKGFMAIKVGQGEEQQRFVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNIRGLIDREKSFHHHHHHHHHHHHHVGCFGF 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181881g00003 132 Pfam Auxin responsive protein 29 103 IPR003676 GO:0009733
Stsc181881g00003 132 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 31 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181881g00003 Stsc-Chr181881 29096 29494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181881g00003 3 108 Calmodulin-binding Proteins AT3G43120 38.679 1.60e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181881g00003 K14488 - gmx:111188139 154.451