Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181881g00002 ATGGGCCAGTGTTACGGCAAGACCAATCCCTCGCCGGAAACTGACGCCGCCGCGATTCCAGCCTCCGACGACCTTCCTCCGCCGTCAGTCACTCCCTCGGTGAAGAACACGCCGGCGAGAGGTTTATTATCGCCGTGGCGAAGCCCTTACCCTCACGGAGGAGGCGTGACACCGTCTCCGGCTAGGACGGCGACGCCGAGAAGGATTTTCCGGCGTCCTTTTCCGCCTCCGTCTCCGGCGAAGCATATTCGTGCGTCGTTGGCGAAGCGGCTTGGACGAGGCGCGGTGGCGGCGAGGGCGAAGGAGGGGACTATACCGGAGGAGGGAGTGGCGGCGGCGGAGGAGGAGGCGGAGGAAGAGGAGGAGGAGCTGGATAAGAGGTTTGGATATGGAAAGAATTTTGGTGCAAAGTATGAGATTGGGAAAGAAATTGGGAAAGGGCATTTTGGTCATACTTGTTATGCAAGGTGTAAGAAAGGTGAATTGAAGGATCAAGCTGTAGCAGTTAAAATCATTTCCAAGTCTAAGATGACAACGGCGATAGCAATAGAAGATGTTCGGAGAGAGGTGAAGATCTTAAAAGCTCTATCTGGCCATAAGCATCTCATCAAATTTTATGATGCTTTTGAAGATGCCAACAATGTGTACATAGTGATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGGATTTTGTCGAGGGGGGGAAAGTATCCAGAGGAGGATGCCAAGGCTATAGTTTTGCAGATTCTAAGCGTAGTTGCTTTTTGTCATCTTCAGGGTGTCGTGCACCGTGACCTAAAACCTGAGAATTTCCTCTTTACTTCAAAAAGTGAAGATGCCGATATGAAGCTTATCGATTTTGGTCTATCGGACTTCATCCGGCCAGACGAACGACTAAATGACATTGTTGGGAGTGCATATTATGTTGCGCCGGAGGTACTTCACAGGTCATATAGTGTGGAAGCAGATATATGGAGTATTGGTGTGATTACATATATCTTATTATGTGGAAGTCGACCATTCTGGGCACGAACAGAATCTGGAATTTTTCGTTCAGTTCTCAGAGCTGATCCTAACTTCGAAGATATACCTTGGCCTTCTGTGTCTTCAGAGGCCAAGGACTTTGTAAGGAGGCTCTTAAACAAGGACTACAGGAAAAGAATGACGGCTGTCCAAGCTCTAACTCACCCTTGGTTGAAGGACGAAAATCGCCCTGTCCCTCTCGATATATTAGTTTATAAACAAGTGAAATCTTATATACACGCTACACCATTCAGACGAGCAGCATTAAAGGCACTTTCAAAGGCTTTGACAGTGGACGAATTGCCCTATCTCAGGGCACAATTCAAATTATTGGAACCAAACCGAGATGGCCACCTATCACTCGACAATTTCAAAATGGCCCTTATACGCCACGCAACCGATTCCATGAGGGAGTCAAAGGTTCTTGATATCATACACACGATGGAACCACTTGCATACAGAAAGATGGACTTTGAAGAATTCTGTGCAGCTGCAGTTAGCATATATCAATTGGAATCACTTGATCAGTGGGAAGATATTTCTTCCAATGCTTTTGAGCACTTTGAGAGAGAGGGTAACCGTGTAATTTCAGTTGAAGAATTAGCAAGAGAACTGAATCTTGGTCCCTCAGCTTATTCAGTTCTGAGAGATTGGGTAAGAAATAGTGATGGAAAGCTGAATTTACTTGGATACACAAAATTTTTGCATGGTGTGACTCCTCGTGGTTTAAACCCTAGACACCACCGTTAG 1776 0.4673 MGQCYGKTNPSPETDAAAIPASDDLPPPSVTPSVKNTPARGLLSPWRSPYPHGGGVTPSPARTATPRRIFRRPFPPPSPAKHIRASLAKRLGRGAVAARAKEGTIPEEGVAAAEEEAEEEEEELDKRFGYGKNFGAKYEIGKEIGKGHFGHTCYARCKKGELKDQAVAVKIISKSKMTTAIAIEDVRREVKILKALSGHKHLIKFYDAFEDANNVYIVMELCEGGELLDRILSRGGKYPEEDAKAIVLQILSVVAFCHLQGVVHRDLKPENFLFTSKSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITYILLCGSRPFWARTESGIFRSVLRADPNFEDIPWPSVSSEAKDFVRRLLNKDYRKRMTAVQALTHPWLKDENRPVPLDILVYKQVKSYIHATPFRRAALKALSKALTVDELPYLRAQFKLLEPNRDGHLSLDNFKMALIRHATDSMRESKVLDIIHTMEPLAYRKMDFEEFCAAAVSIYQLESLDQWEDISSNAFEHFEREGNRVISVEELARELNLGPSAYSVLRDWVRNSDGKLNLLGYTKFLHGVTPRGLNPRHHR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181881g00002 591 FunFam CDPK-related kinase 3 130 302 - -
Stsc181881g00002 591 Gene3D Transferase(Phosphotransferase) domain 1 227 418 - -
Stsc181881g00002 591 SUPERFAMILY Protein kinase-like (PK-like) 130 424 IPR011009 -
Stsc181881g00002 591 FunFam CDPK-related kinase 1 436 508 - -
Stsc181881g00002 591 Pfam Protein kinase domain 138 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181881g00002 591 MobiDBLite consensus disorder prediction 1 81 - -
Stsc181881g00002 591 Gene3D - 419 580 - -
Stsc181881g00002 591 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Stsc181881g00002 591 PANTHER SERINE/THREONINE-PROTEIN KINASE 122 565 - -
Stsc181881g00002 591 SMART serkin_6 138 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181881g00002 591 CDD STKc_CAMK 137 399 - -
Stsc181881g00002 591 Gene3D Phosphorylase Kinase; domain 1 131 226 - -
Stsc181881g00002 591 ProSiteProfiles Protein kinase domain profile. 138 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181881g00002 591 MobiDBLite consensus disorder prediction 109 123 - -
Stsc181881g00002 591 FunFam CDPK-related kinase 1 131 226 - -
Stsc181881g00002 591 SUPERFAMILY EF-hand 426 579 IPR011992 -
Stsc181881g00002 591 MobiDBLite consensus disorder prediction 106 125 - -
Stsc181881g00002 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Stsc181881g00002 591 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Stsc181881g00002 591 FunFam Calcium-dependent protein kinase SK5 310 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181881g00002 Stsc-Chr181881 11692 17701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181881g00002 33 585 EF-hand Containing Proteins AT3G50530 59.664 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc181881g00002 Pkinase 5.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181881g00002 K13412 - gmx:100796256 938.717