Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181880g00001 ATGGGCCTTTTGGTTTTCAGTAGTTGTTGCATATTGTTCCATGCAGCAACAACAACCGTGACGTCCACCGCCACCACCTACCGCGACACCACGCCTAAAGTAGTAGTCTCTTCCAAGAACGCTTCTGGATACAACTTCCGGTGGCCTGGACCCATTGGTCACCGCGTCATCACTGTTGATGCCAACGGCGGTGGCCATTTCCGGTCGGTCCAAGACGCCATCGATTCCATCCCGGACAATAATAGAATGAACGTTCTCATTCAAATTAGCGCCGGAGTCTATGTAGAGAAAGTGGTGGTGCCGGTGACGAAGCCATACATTACACTTCAGGGGGCGGGGAGGGACACGACGGCGATAGAATGGCACGACCGAGCAAGTGACCGTGGCCCCAACGGACAACAACTTCGTACTTACAGAACGGCTTCTGTTACTGTCTTTGCCAATTATTTCTCTGCTAGGAATATCACCTTCAAGAACACAGCCCCAGCACCATTGCCAGGGATGGAAGGACGGCAAGCAGCGGCGTTTCGCATATCCGGGGACAAAGCATACTTCTCCGGCTGCGGCTTCTACGGTGCTCAAGACACTCTCTGCGACGACGCTGGCCGCCATTACTTCAAGGAATGCTACATCCAGGGCTCCATAGATTTCATTTTTGGTAACGGCAGGTCCATGTACAAGGATTGCGAGCTTCACTCAATAGCAACAAGGTTTGGGTCAATAGCGGCCCAAGACAGAAGATCCCCATACGAGAAGACAGGCTTCGCATTTGTACGTTGTACGGTAACAGGCTCAGGCCCAATATATGTGGGCCGTGCAATGGGCCAGTACTCTAGGATCGTGTATGCATATACCTACTTCGCAGACATAGTTGCTCATGGTGGTTGGGATTATTGGAACGGTGCAGACAACAAGAACAAGACTGCATTTTTTGGGGTGTACAAGTGCTGGGGCCCAGGAGCAGCTAAAATTAGTAGGGCCTCATTGGCCCAAGAACTTGATTACGAAGCAGCCCATCCATTCCTGGTCAAGAGTTTTGTCAATGGTAGACACTGGATTGCGCCCTCTGATGCTTAG 1077 0.5144 MGLLVFSSCCILFHAATTTVTSTATTYRDTTPKVVVSSKNASGYNFRWPGPIGHRVITVDANGGGHFRSVQDAIDSIPDNNRMNVLIQISAGVYVEKVVVPVTKPYITLQGAGRDTTAIEWHDRASDRGPNGQQLRTYRTASVTVFANYFSARNITFKNTAPAPLPGMEGRQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIQGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRRSPYEKTGFAFVRCTVTGSGPIYVGRAMGQYSRIVYAYTYFADIVAHGGWDYWNGADNKNKTAFFGVYKCWGPGAAKISRASLAQELDYEAAHPFLVKSFVNGRHWIAPSDA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181880g00001 358 SUPERFAMILY Pectin lyase-like 54 355 IPR011050 -
Stsc181880g00001 358 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 53 354 - -
Stsc181880g00001 358 ProSitePatterns Pectinesterase signature 2. 211 220 IPR033131 -
Stsc181880g00001 358 Gene3D - 53 357 IPR012334 -
Stsc181880g00001 358 FunFam Pectinesterase 52 355 - -
Stsc181880g00001 358 Pfam Pectinesterase 57 349 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181880g00001 Stsc-Chr181880 20371 24718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181880g00001 3 358 Carbohydrate Esterase AT5G47500 69.944 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181880g00001 - - gmx:100796327 583.563