Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181878g00004 ATGGCTCTTATGATTCTTGTCATTGTTCTCTTCATGCAAGCTGCCACCGCTGACTATGGTGGTTGGGAGAGTGCTCATGCCACTTTCTATGGTGGTGGTGATGCCTCTGGCACTATGGGAGGTGCTTGTGGATATGGGAATTTGTATAGCCAAGGTTATGGAACAAACACAGCAGCACTTAGCACAGCTTTGTTCAACAATGGACTAAGCTGTGGATCATGCTATGAGATGAGGTGTGATGATGACCCCAGATGGTGCAAGCCCGGCTCCATTATCGTCACCGCCACCAACTTCTGCCCGCCGAACCCGGCATTGCCGAACAACAATGGTGGTTGGTGCAACCCTCCTTTGCAGCACTTTGATATGGCTGAACCAGCATTCTTGCAAATTGCTGAATATAGAGCTGGAATTGTCCCTGTATCCTTCAGAAGAGTTCCTTGCATGAAGAAGGGAGGAATAAGGTTCACCATTAATGGCCACTCTTACTTCAACCTAGTTTTGGTAACAAATGTTGGAGGTGCTGGTGATGTTCATTCAGTTTCCATCAAAGGATCAAGAACTGGGTGGCAACCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCTTACCTCAATGGTCAAAGCCTCTCATTTCAAGTCACCACCAGTGACGGTAGAACTGTCACAGCCTTCAACGTGGCACCACCTAATTGGCAGTTTGGTCAAACCTTCCAAGGGGGCCAATTCTAG 735 0.4776 MALMILVIVLFMQAATADYGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSIIVTATNFCPPNPALPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTAFNVAPPNWQFGQTFQGGQF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181878g00004 244 Gene3D - 151 244 IPR036749 -
Stsc181878g00004 244 FunFam Expansin 152 244 - -
Stsc181878g00004 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Stsc181878g00004 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Stsc181878g00004 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576
Stsc181878g00004 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Stsc181878g00004 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Stsc181878g00004 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Stsc181878g00004 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Stsc181878g00004 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Stsc181878g00004 244 SUPERFAMILY Barwin-like endoglucanases 6 170 IPR036908 -
Stsc181878g00004 244 PANTHER EXPANSIN-A15 3 244 IPR002963 GO:0009664
Stsc181878g00004 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Stsc181878g00004 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Stsc181878g00004 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Stsc181878g00004 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664
Stsc181878g00004 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Stsc181878g00004 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Stsc181878g00004 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Stsc181878g00004 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Stsc181878g00004 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Stsc181878g00004 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Stsc181878g00004 244 Gene3D - 8 148 IPR036908 -
Stsc181878g00004 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Stsc181878g00004 244 FunFam Expansin 12 148 - -
Stsc181878g00004 244 CDD DPBB_EXPA_N 21 147 - -
Stsc181878g00004 244 SMART dpbb_1 57 142 IPR007112 -
Stsc181878g00004 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181878g00004 Stsc-Chr181878 23181 25194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181878g00004 2 244 Expansin Gene Family AT2G40610 80.328 3.85e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181878g00004 - - gmx:100499976 445.277