Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181878g00002 ATGGGGAATAACAAGTTCAAATTTTCAGATATGATACCAAATAGTTGGTTTTACAAACTAAGGGACATGAGCAAATCAAGGAAGAAGGGAAACAATGGCAAGAAAGTAACAACTTCAAGCTCTCAAAGTTCACAAACAAGAAACTTTCATCACTGTAACAAAGCTGGTAAGTTCCATAACTCTCCTATTTACACAAAACATTCTGATTTTGTATTTGGCGAGTGGTCTAGAAAATCGTCCTCAAAGAGAAGAACTCATAGGAAAACAATCTATGAGCCTTCTTCACCACCTATTGTTTCTTCTCCGGTGTTAGAATCTTGGAGCTTTCATTCTTCAAAACAAGAAACAAGAGGGTGTGATTTGTCGTCCGACTGCCACGAGTTTAATGCTCGTGGCAGGGCTAATTGCAGATTGAGTTCTTCAACCAATGACATCATAATTGACATGACAAGTGGATCATTCGACGAAGAAATTTCGCCATTAGGCCTTGCTCCAATCTTGACAAAGCCGGCGAAATTCGAAGAAAAAATCACTAGAACTTCAGCTAAAAAGTGTCCCGTATCTAGAAAATCCTCTGCTAATTCCAAAGGCATAAAGCTAAGAGTGAATTCTCCAAAACTTGCAAGAAGGAGTGTGTCTTCCAAACCATGCAAAGGCTCATCAAACTCATCAAAGAATGCTGGTTTTCCGGAGAGTTTTCCGATCGTTAAGTCGTCGGTGGATCCACATAAAGACTTCAGGGATTCAATGGTGGAGATGATCAAAGAGAATAAAATAAGTGCTTGCAAGGATTTGGAGAAGCTTCTTGCCTGCTATCTTTCACTGAATTCAAGTGAATACCATGATCTCATTGTTAAAGCATTTGAGCAAATATGGTATGACATGTCTCAACTTAAATTGTAA 903 0.3876 MGNNKFKFSDMIPNSWFYKLRDMSKSRKKGNNGKKVTTSSSQSSQTRNFHHCNKAGKFHNSPIYTKHSDFVFGEWSRKSSSKRRTHRKTIYEPSSPPIVSSPVLESWSFHSSKQETRGCDLSSDCHEFNARGRANCRLSSSTNDIIIDMTSGSFDEEISPLGLAPILTKPAKFEEKITRTSAKKCPVSRKSSANSKGIKLRVNSPKLARRSVSSKPCKGSSNSSKNAGFPESFPIVKSSVDPHKDFRDSMVEMIKENKISACKDLEKLLACYLSLNSSEYHDLIVKAFEQIWYDMSQLKL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181878g00002 300 ProSiteProfiles OVATE domain profile. 235 294 IPR006458 -
Stsc181878g00002 300 Pfam DNA-binding domain 1 46 IPR025830 GO:0003677
Stsc181878g00002 300 NCBIfam uncharacterized plant-specific domain TIGR01568 236 295 IPR006458 -
Stsc181878g00002 300 MobiDBLite consensus disorder prediction 33 47 - -
Stsc181878g00002 300 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 47 296 IPR038933 GO:0045892
Stsc181878g00002 300 Pfam Transcriptional repressor, ovate 239 295 IPR006458 -
Stsc181878g00002 300 MobiDBLite consensus disorder prediction 207 228 - -
Stsc181878g00002 300 MobiDBLite consensus disorder prediction 23 47 - -
Stsc181878g00002 300 MobiDBLite consensus disorder prediction 206 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181878g00002 Stsc-Chr181878 7732 8634 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Stsc181878g00002 Ovate 5.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181878g00002 - - adu:107474777 405.216