Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181874g00001 ATGGGTTGGTTTACCAAGTTGCTTAAGGGATCCAACCATAAATCTTCGAGAGGAGAACATCGTGGGAAATATGATAATTCCAGGGATGATTTGACAGATATTGAGAGAGAAGAAATCGACCGCGCAATTGCGCTCTCTCTTTCGGAGGAAGATCAAAAGGGGAAAAAAGTTATTGAGGATGACTCTCAATCCTCAGACGATGAACAACTATGTGAACTAACTGAGGATGAAGATGAATATCCCAGTGAAGTTAAACAACATGAAGAACTAAGTGAAGATCACAAGGAGGAAGATGAATCTGTTGGCGAAGTTGAGGAAGAGGAAGATGACCATCTTAAAAAAAATCAACAGGATAAAGACAAGCATCTTGCCGAAGCGCAGCTTGAGGAAGATGAACAACTGGCCAGAGCACTTCAAGAAAGTTTGAACAATGACTCAGATAGAGCTGAAAGGGATTCTTTATTTCAACCATTTCCACACCTCTTTCCACCTGTATATAGAATCTGTGCTGGCTGCAATTCAGAGATTGGCCATGGTAGATTTTTGAGTTGCATGGGAGGTGTCTGGCATCCAGAATGTTTCTGTTGCCATGCTTGTAATTTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCATGGTTACCATAAATCTTGCTACAAGGAACTGCATCACCCAAGATGTGATGTTTGCAAGAACTTCATCCCACCCAATTCAGCTGGACTCATTGAGTATAGAGCACATCCTTTCTGGATGCAGAAATACTGTCCTTCACACGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGTCAAGGGATACAAAGTATCTTTTGCTCGATGATGGTCGAAAGTTATGCCTAGAGTGTCTAGACTCGGCTATTATGGATACGCATGAATGCCAGCCTCTCTATCTTGAAATACAAGAATTCTATGAAGGTTTAAATATGAAAATAGAACAGCAAGTTCCAATGCTTTTAGTTGAGAGACAAGCACTCAACGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACAAGAGGACTTTGCTTGTCGGAGGAGCAAACTGTTGCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGATACCGAGTCATTGATATGATAACTGAGCCTTACAGGCTAATCCGCCATTGCGAAGTGACAGCCATACTGCTTTTGTATGGCCTTCCTAGGCTATTGACGGGGTCAATCCTGGCTCATGAGATGATGCATGGTTGGCTTAGGCTTAAAGGCTATGGCAATTTAAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTGTTAGCTCACATGTGGCTAGATTCAGAGATCTACGCGGGTTCAGGAAGCGACAGTGGATCATCGTCATCATCGGCATCATCATCATCCTCATCTTCGCCTTCCTCTTCTTCATCATCAAAGAAGGGTAAACGGTCTGACTTTGAGAAGAAACTTGGCAAGTTTTTCAAACACCAGATTGAGTCGGATCGTTCTTCGGCTTATGGAGATGGATTCAGAGAGGGGAACCAGGCTGTGCTCAAGTATGGTTTAAGAAGTACCCTTGATCATATTCGACTCACAGGAAGTTTCCCATATTGA 1623 0.4313 MGWFTKLLKGSNHKSSRGEHRGKYDNSRDDLTDIEREEIDRAIALSLSEEDQKGKKVIEDDSQSSDDEQLCELTEDEDEYPSEVKQHEELSEDHKEEDESVGEVEEEEDDHLKKNQQDKDKHLAEAQLEEDEQLARALQESLNNDSDRAERDSLFQPFPHLFPPVYRICAGCNSEIGHGRFLSCMGGVWHPECFCCHACNLPITDYEFSMSGNHGYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWMQKYCPSHERDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVATILRRPRIGAGYRVIDMITEPYRLIRHCEVTAILLLYGLPRLLTGSILAHEMMHGWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYAGSGSDSGSSSSSASSSSSSSPSSSSSSKKGKRSDFEKKLGKFFKHQIESDRSSAYGDGFREGNQAVLKYGLRSTLDHIRLTGSFPY 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181874g00001 540 FunFam Protein DA1-related 1 163 222 - -
Stsc181874g00001 540 SMART uim 34 53 IPR003903 -
Stsc181874g00001 540 SMART uim 129 148 IPR003903 -
Stsc181874g00001 540 MobiDBLite consensus disorder prediction 1 32 - -
Stsc181874g00001 540 PANTHER PROTEIN DA1-RELATED 2 3 540 IPR045218 -
Stsc181874g00001 540 MobiDBLite consensus disorder prediction 12 32 - -
Stsc181874g00001 540 MobiDBLite consensus disorder prediction 45 63 - -
Stsc181874g00001 540 MobiDBLite consensus disorder prediction 64 79 - -
Stsc181874g00001 540 ProSitePatterns LIM zinc-binding domain signature. 169 203 IPR001781 -
Stsc181874g00001 540 SMART lim_4 168 220 IPR001781 -
Stsc181874g00001 540 CDD LIM_DA1 169 221 - -
Stsc181874g00001 540 MobiDBLite consensus disorder prediction 459 482 - -
Stsc181874g00001 540 MobiDBLite consensus disorder prediction 45 120 - -
Stsc181874g00001 540 Pfam Protein DA1 318 535 IPR022087 -
Stsc181874g00001 540 Coils Coil 87 107 - -
Stsc181874g00001 540 Gene3D Cysteine Rich Protein 166 228 - -
Stsc181874g00001 540 Pfam LIM domain 169 223 IPR001781 -
Stsc181874g00001 540 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 129 148 IPR003903 -
Stsc181874g00001 540 MobiDBLite consensus disorder prediction 459 488 - -
Stsc181874g00001 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 254 - -
Stsc181874g00001 540 Coils Coil 112 148 - -
Stsc181874g00001 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 194 - -
Stsc181874g00001 540 ProSiteProfiles LIM domain profile. 167 227 IPR001781 -
Stsc181874g00001 540 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181874g00001 Stsc-Chr181874 6148 12063 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181874g00001 DA1-like 2e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181874g00001 - - gmx:100806605 857.055