Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181864g00001 ATGTATCACGCGAAGAAGTTCTCGTCGGCAGCGATGGTGCCGCATAAACCTCAAGGTGGTGGCGAACAAGTTGGAAGTGTCGGGGTTTTGGATGGATCGGCGATGAGGAATGCGGGACCAGCTAACTCTGGTGGAAGTGGGAAGCAGCGTTTGCGATGGACATCTGATCTTCATGACCGTTTTGTGGATGCTATTACGCAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTAAGAGTGATGGGTGTACCTGGACTTACTATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTACTTGCCTGAGTCTCCAGCTGATGACTCTAAAGATGAGAAAAGGACATCTGGAGACAGTGTTGCTGGCATAGATTCTTCCCAGGGGTTGCAAATCAATGACGCTCTAAGAATGCAGATGGAGGTTCAGAAACGTCTTCATGAACAACTTGAGGTGCAAAAGCAGTTACAAATGAGAATTGAAGCCCAGGGGAAATACTTGCAGAAGATCATAGAGGAACAACAGAAATTAGGTAGTACCTTGACAACTTCAGACACATTGCCATTGTCCCACGATAAGCAAAATAATCCCCAGCCAGAGCCTTCCGGATCTAGCGATGTCGTTGCGGATGCTATGTCTCCACTTAAAAAACAGAGAATGGAAGATGGTTCAAAGGATGGCTTTGCTGCTTCTCAGGTGACAACAAAGACTTCACAAAAGACTGATTGTAGTGCTGATCAGCTGGACTCGTATGAAAATGAGGATGGGTTTGGATTAAATTGGGAGACAAAAAAGGATGAAGATAAGTAG 822 0.4489 MYHAKKFSSAAMVPHKPQGGGEQVGSVGVLDGSAMRNAGPANSGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDSKDEKRTSGDSVAGIDSSQGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSDTLPLSHDKQNNPQPEPSGSSDVVADAMSPLKKQRMEDGSKDGFAASQVTTKTSQKTDCSADQLDSYENEDGFGLNWETKKDEDK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181864g00001 273 Coils Coil 137 157 - -
Stsc181864g00001 273 MobiDBLite consensus disorder prediction 108 131 - -
Stsc181864g00001 273 MobiDBLite consensus disorder prediction 183 207 - -
Stsc181864g00001 273 MobiDBLite consensus disorder prediction 1 22 - -
Stsc181864g00001 273 MobiDBLite consensus disorder prediction 232 250 - -
Stsc181864g00001 273 Gene3D - 47 106 - -
Stsc181864g00001 273 MobiDBLite consensus disorder prediction 108 123 - -
Stsc181864g00001 273 FunFam Myb family transcription factor 47 105 - -
Stsc181864g00001 273 Pfam MYB-CC type transfactor, LHEQLE motif 134 180 IPR025756 -
Stsc181864g00001 273 SUPERFAMILY Homeodomain-like 47 102 IPR009057 -
Stsc181864g00001 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Stsc181864g00001 273 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 47 252 IPR044848 GO:0003700
Stsc181864g00001 273 Pfam Myb-like DNA-binding domain 51 101 IPR001005 -
Stsc181864g00001 273 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
Stsc181864g00001 273 MobiDBLite consensus disorder prediction 183 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181864g00001 Stsc-Chr181864 5157 8836 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181864g00001 43 190 G2-like Transcription Factor Family AT4G28610 55.333 2.24e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc181864g00001 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181864g00001 - - adu:107494193 454.907