Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181863g00002 GGGACTCCGGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGATCCAGATGTCTGTTGGATTGATGGACAGGTATCAAAAATCACGGGAAACGATGCCGAAATTGAAACTACCAATGGAAAAAAGACTTACACTGGAAATATTCTGATTGCAATAAATCCTTTTCAAAAACTGCCACATATCTATGGTACGCACATGATGCAGCAATACAAGGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTTGCTGTTGCTGATGTTGCATATAGGGCAATGATTAATGAAGGGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATTTCTTGCCTACTTAGGTGGTAGGGCTGGCACAGAAGGCCGAACAGTTGAACAACAAGTTCTTGAGTCAAATCCAGTTTTAGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCTAGTCGTTTTGGTAAATTTGTGGAGATCCAATTTGATAAAAGTGGAAGAATCTCAGGAGCAGCCATCAGAACGTACCTTCTAGAGAGGTCTCGAGTTTGCCAAGTTAATGATCCAGAACGCAACTATCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGAAGTCCTAAAACTTTTCACTACCTTAACCAGTCAAAATGTTATGAACTGGCTGACGTAAGTGATGCTCGTGAATTTCTTGCCACCCGGAGAGCTATGGATATTGTTGGAATCAGCCAAAAGGATCAGGAAGCCATTTTTAGAGTTGTTGCTTCAATTCTCCATCTTGGTAATATTAATTTTACCAAAGGAAAAGAAGTTGACTCATCAGTTCCAAAAGATGACAAAGCCAAATTCCACCTTCAGACTACTGCTGAGCTTCTAATGTGTGATGCTGAGGCTTTGCAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTTATAAAACGGAGCCTTGATCCCCAAAGTGCAACAGTGAGTAGAGATGGATTGGCAAAAACAATTTATTCTCGGCTGTTTGACTGGTTGGTGGACAAGATTAATAATTCAATTGGACAAGACCCCAATTCTAAAACTTTGATTGGAGTCCTTGACATATATGGTTTTGAAAGTTTTAAGACTAACAGTTTTGAACAGTTTTGCATTAATTTCACAAATGAGAAGTTGCAACAGCATTTCAATCAGCACGTTTTTAAAATGGAACAAGAAGAATATACAAAGGAGAAAATTAACTGGAGCTACATTGAATTTGTTGACAATCAAGATGTTTTAGACCTTATTGAAAAGAAACCCGGAGGAATCATTGCTCTCCTAGATGAAGCTTGCATGTTTCCAAAGTCTACGCATGAAACTTTTGCAAACAAACTTTATCAAACATTTAAGAGCCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACAGATTTCACAATTGCTCATTATGCTGGGGAGCTACAACTACAAAGTCTAATGGAGACATTAAATTCTACAGAACCCCATTACATCAGATGTGTGAAACCAAATAACCTCTTGAAGCCTGCTATTTTTGAGAATGCCAACATTATGCAACAGCTCCGCTGTGGTGGTGTTTTAGAGGCAATCCGAATCAGTTGTGCTGGCTATCCTACTCGCCGTGCTTTTTTTGAATTTGTGAACAGATTTGGTCTTCTTGCTCCAGAGGCCACAGAAGCAAATTATGACGAAAAGACTGCTTGCCAAAAGATTCTGGAAAAGATGGGGCTTAATGGATATCAGATTGGAACGACAAAGGTATTTCTAAGAGCAGGCCAGATGGCTCAACTAGATGCATGTAGATCTCAAGTACTCAGTAATGCAGCAAAAATTATCCAACGGCGCATAAGAACCCATCAAGCTCGTAATCATTATCTTGCACTTCGAAAGAAGACCATATATCTGCAGTCTTGGTGGAGAGGAAGACTTGCATGCAAACTATATGAGAACATGAGAAAGGAGGCTGCTGCCATTAAAATTCAAAAGCACACACGCAGATATCAAGCTTGTAAAGCCTACAAGAAACTTCATGTGTCAGCATTGACAGTTCAAACAGCTTTCAGGGCCATCGCTGCTCGCAAGGAGTTCAGATTTAGGAAGCAGACCAAAGCCTCCATTGTTATTCAGGCTCGGTGGCGGTGCCACAAAGCTGCGTTATATTATAAGAGGCTCAAGAAAGGGACAATAGTTACACAATGCAAATGGAGGGGACGTGTGGCCAGAAGAGAACTTAGGAAACTAAAAATGGCTGCAAGAGAAACTGGAGCGCTTCAAGAAGCAAAGGATAAGCTTGAAAAACGTGTGGAGGAACTCACTTGGCGTCTCCAACTAGAAAAAGGATTAAGGACCAATCTAGAAGAATCTAAAGCTCAAGAGATAACAAAACTACAGAATCAATTACAGGAGATGCAAAGCAAATTTGAGGAGACTAATGTTCTTCTTGCCAAGGAGCGAGAGAATGTAAAGAAAATTACTGTAGAAGCAGTTCCTGTTATTCAAGAAAAACAGGTTATCGTTGAAGATACACAAAAGATTGAGGCATTGGCGGCTGAAGTTGAGAGCCTAAAGAAATCACTTGAGTCAGAAAAAGAGAAAGCTAATGACTTTGAACAAAAGTATAATGAAGCCCAAGTTAGTAGTGAAGAAAGAGGTAAAAAGTTAGAAGACACGGAGAAGAAGGTTCGTCAGCTCCAAGAATCATTGACAAGGTTAGAAGAGAAGATTGCTAACGTAGAATCAGAGAACCAGGTTCTACGTCAACAAGCTGTCTCGATGGCACCTAATAAGTTCCTTCACAGACGCCAGAGCTCACTTGCACAGAGAGAGAGGGCTGCTGAAAGTGCTCATAGTGTTGCAGTGGAGGGGAAACCACATGTGACTAATCAGGAACTGCAAACTAGCCCATCAATGAATCAAAGGGAATCTTCTGAAGTGGATGATAAACCACAGAAATCACTAAACGAGAAACAACAAGAGAATCAAGAATTATTAATTAGATGCATTGCACAACATCTAGGATTTGCTGGAAATAGACCCATTGCTGCCTGTATCATATACAAGTGCCTCTTGCATTGGAGATCATTTGAAGTTGAGCGCACTAGCGTTTTTGATAGAATCATCCAGACTATTGGCCATGCAATTGAGACCCAGGATAACAATGATGTCTTAGCTTACTGGTTATCCAATGCCTCCACACTTCTCTTGTTACTACAGCGCACACTCAAAGCAAGTGGTACTGCTGGAATGGCTCCACAACGCCGTCGTTCTCAATCAGCAACCCTGTTTGGGAGGATGACTCAAAGTTTCCGTGGAAATCCAGCAGGAGTCAATCTGTCGTTAATTAATGGTAGTTCAAGTAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCTTTGCTTTTCAAACAGCAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGTGAAAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTGTGCATCCAGGCACCAAGAACATCTAGAGCAAGCTTGGTTAAAGGATCGTCACGTTCTGTTGCGAACACCGAAGCCCAGAAAGCTTTGATCGCTCACTGGCAGGGGATAGTTAAGAGCTTAGGAAACTTTTTAAATACATTGAAAGCAAATCATGTTCCGCCATTTTTGGTTCGTAAGGTGTTCACACAAATTTTCTCTTTCATCAATGTACAATTATTCAATAGTCTTCTTCTTAGACGAGAGTGTTGCTCATTTAGTAATGGAGAATATGTTAAAGCTGGTTTGGCTGAACTAGAGCATTGGTGTTATAAGGCAACGGATGAGTATGCAGGTTCAGCCTGGGACGAGCTTAAACATATTAGACAAGCCATTGGATTTCTGGTTATACATCAAAAACCGAAGAAAACACTGGATGAAATAAGTCATGACTTGTGCCCAGTCCTCAGTATACAGCAGTTATATCGGATTAGCACCATGTATTGGGATGACAAATATGGCACGCATAGTGTGTCACCTGAAGTCATATCGAATATGAGAGTGTTGATGACTGAAGATTCAAATAATGCAGTTAGTAATTCTTTCTTGTTGGATGATGACTCAAGCATTCCATTTTCTGTTGATGACATTTCAAAGTCAATGGAACAAATAGATATCGCTGATATAGATCCGCCGCCACTTATACGAGAAAACTCCGGGTTTAGCTTTTTATTGCCACGCCCAGATTGA 4296 0.4036 GTPVNIIVGSHVWIEDPDVCWIDGQVSKITGNDAEIETTNGKKTYTGNILIAINPFQKLPHIYGTHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMQFLAYLGGRAGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGSPKTFHYLNQSKCYELADVSDAREFLATRRAMDIVGISQKDQEAIFRVVASILHLGNINFTKGKEVDSSVPKDDKAKFHLQTTAELLMCDAEALQDALCKRVMITPEEVIKRSLDPQSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKTLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEKINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFIKPKLSRTDFTIAHYAGELQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENANIMQQLRCGGVLEAIRISCAGYPTRRAFFEFVNRFGLLAPEATEANYDEKTACQKILEKMGLNGYQIGTTKVFLRAGQMAQLDACRSQVLSNAAKIIQRRIRTHQARNHYLALRKKTIYLQSWWRGRLACKLYENMRKEAAAIKIQKHTRRYQACKAYKKLHVSALTVQTAFRAIAARKEFRFRKQTKASIVIQARWRCHKAALYYKRLKKGTIVTQCKWRGRVARRELRKLKMAARETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEITKLQNQLQEMQSKFEETNVLLAKERENVKKITVEAVPVIQEKQVIVEDTQKIEALAAEVESLKKSLESEKEKANDFEQKYNEAQVSSEERGKKLEDTEKKVRQLQESLTRLEEKIANVESENQVLRQQAVSMAPNKFLHRRQSSLAQRERAAESAHSVAVEGKPHVTNQELQTSPSMNQRESSEVDDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGTAGMAPQRRRSQSATLFGRMTQSFRGNPAGVNLSLINGSSSRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRENLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPEVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDIADIDPPPLIRENSGFSFLLPRPD 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181863g00002 1431 SMART DIL_2 1249 1356 IPR002710 -
Stsc181863g00002 1431 CDD MYSc_Myo11 44 614 IPR036018 -
Stsc181863g00002 1431 ProSiteProfiles Myosin motor domain profile. 506 626 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181863g00002 1431 ProSiteProfiles Myosin motor domain profile. 44 504 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181863g00002 1431 MobiDBLite consensus disorder prediction 887 916 - -
Stsc181863g00002 1431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 680 777 IPR027417 -
Stsc181863g00002 1431 Coils Coil 771 798 - -
Stsc181863g00002 1431 SMART iq_5 651 673 IPR000048 GO:0005515
Stsc181863g00002 1431 SMART iq_5 676 698 IPR000048 GO:0005515
Stsc181863g00002 1431 SMART iq_5 628 650 IPR000048 GO:0005515
Stsc181863g00002 1431 SMART iq_5 724 746 IPR000048 GO:0005515
Stsc181863g00002 1431 SMART iq_5 747 769 IPR000048 GO:0005515
Stsc181863g00002 1431 SMART iq_5 699 721 IPR000048 GO:0005515
Stsc181863g00002 1431 ProSiteProfiles IQ motif profile. 700 729 IPR000048 GO:0005515
Stsc181863g00002 1431 MobiDBLite consensus disorder prediction 957 1013 - -
Stsc181863g00002 1431 Gene3D Kinesin motor domain 37 247 IPR036961 -
Stsc181863g00002 1431 Gene3D - 561 624 - -
Stsc181863g00002 1431 SMART MYSc_2a 38 627 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181863g00002 1431 FunFam Myosin 2 263 378 - -
Stsc181863g00002 1431 Pfam Myosin N-terminal SH3-like domain 8 43 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc181863g00002 1431 MobiDBLite consensus disorder prediction 983 997 - -
Stsc181863g00002 1431 ProSiteProfiles IQ motif profile. 677 706 IPR000048 GO:0005515
Stsc181863g00002 1431 CDD MyosinXI_CBD 1012 1397 IPR037975 GO:0007015
Stsc181863g00002 1431 MobiDBLite consensus disorder prediction 998 1012 - -
Stsc181863g00002 1431 PRINTS Myosin heavy chain signature 433 461 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181863g00002 1431 PRINTS Myosin heavy chain signature 147 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181863g00002 1431 PRINTS Myosin heavy chain signature 380 408 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181863g00002 1431 PRINTS Myosin heavy chain signature 100 125 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181863g00002 1431 PRINTS Myosin heavy chain signature 43 62 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181863g00002 1431 ProSiteProfiles IQ motif profile. 652 681 IPR000048 GO:0005515
Stsc181863g00002 1431 Gene3D Myosin VI head, motor domain, U50 subdomain 263 396 - -
Stsc181863g00002 1431 ProSiteProfiles IQ motif profile. 725 752 IPR000048 GO:0005515
Stsc181863g00002 1431 FunFam unconventional myosin-Va 727 775 - -
Stsc181863g00002 1431 Coils Coil 862 945 - -
Stsc181863g00002 1431 Coils Coil 810 844 - -
Stsc181863g00002 1431 ProSiteProfiles IQ motif profile. 748 777 IPR000048 GO:0005515
Stsc181863g00002 1431 Gene3D - 628 678 - -
Stsc181863g00002 1431 Gene3D - 679 726 - -
Stsc181863g00002 1431 Gene3D - 727 776 - -
Stsc181863g00002 1431 Gene3D - 397 517 - -
Stsc181863g00002 1431 Pfam DIL domain 1250 1353 IPR002710 -
Stsc181863g00002 1431 Pfam IQ calmodulin-binding motif 631 649 IPR000048 GO:0005515
Stsc181863g00002 1431 Pfam IQ calmodulin-binding motif 726 746 IPR000048 GO:0005515
Stsc181863g00002 1431 Pfam IQ calmodulin-binding motif 750 769 IPR000048 GO:0005515
Stsc181863g00002 1431 Pfam IQ calmodulin-binding motif 653 668 IPR000048 GO:0005515
Stsc181863g00002 1431 Pfam IQ calmodulin-binding motif 679 698 IPR000048 GO:0005515
Stsc181863g00002 1431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 679 IPR027417 -
Stsc181863g00002 1431 PANTHER MYOSIN 44 504 - -
Stsc181863g00002 1431 ProSiteProfiles Dilute domain profile. 1061 1374 IPR002710 -
Stsc181863g00002 1431 ProSiteProfiles IQ motif profile. 629 656 IPR000048 GO:0005515
Stsc181863g00002 1431 FunFam unconventional myosin-Va 631 679 - -
Stsc181863g00002 1431 Pfam Myosin head (motor domain) 44 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181863g00002 Stsc-Chr181863 8878 21375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181863g00002 1 1431 Myosins gene family AT1G54560 75.130 0.0 2366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181863g00002 K10357 - gmx:100816792 2437.91