Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181862g00004 ATGGCTCTGCTGTGTGGCTCCGCATCGGTCACTTTCCCTTCATCTTCTTTCCCTCGTCACACTCACACCAATACCTCTTCCTCATTCCTTGGGTTACAATTTCCACTGCAAAACCTATCATCCTTATCATTATCTTCTTCCTCTTCTTCTTCCAACACCAAGGCAAGAACCCTCCGTATCCATTGTCAGCAGGAAGATTCTTCCCCCATTCCCGCTCCGCCAGAACAAGATCCCCGATTCCTCTGCGTCGAACCCGAACCCCGATTCAAAGGCCCGGACATTTGGAACAAGACCTGGTATCCGAAAGCTGCCGATCATGTTAATACGGAGAAAACATGGTATGTTGTTGATGCTACAGACAAAGTTCTTGGCAGACTGGCATCGACAATCGCTATTCATATTCGAGGGAAAAATCTAGAAACATATACTCCCAGTGTGGACATGGGTGCGTTTGTAATTGTGGTGAATGCTGAAAAGGTTGCTGTATCTGGGAAAAAGAGAACCCAAAAGCTTTACAGGAGGCACTCTGGCAGACCTGGTGGTATGACAGTGGAGACATTTGCTCAACTGCAGAACAGAATTCCTGAAAGAATTATCGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGGAGGAGGCTATTCACCCACCTGAAGGTTTATGAGGGCCCAGATCATCCTCATGCAGCGCAGAAGCCCATCGAACTGCCAATTCAGGACAAGAGAATACATTTACAGAGATAG 750 0.4747 MALLCGSASVTFPSSSFPRHTHTNTSSSFLGLQFPLQNLSSLSLSSSSSSSNTKARTLRIHCQQEDSSPIPAPPEQDPRFLCVEPEPRFKGPDIWNKTWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYEGPDHPHAAQKPIELPIQDKRIHLQR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181862g00004 249 Gene3D Ribosomal protein L13 102 246 IPR036899 GO:0003735|GO:0005840|GO:0006412
Stsc181862g00004 249 PANTHER RIBOSOMAL PROTEIN L13 99 244 IPR005822 GO:0003735|GO:0005840|GO:0006412
Stsc181862g00004 249 CDD Ribosomal_L13 113 226 IPR005822 GO:0003735|GO:0005840|GO:0006412
Stsc181862g00004 249 FunFam 50S ribosomal protein L13 96 240 - -
Stsc181862g00004 249 NCBIfam 50S ribosomal protein L13 107 238 IPR005823 GO:0003735|GO:0005840|GO:0006412
Stsc181862g00004 249 Pfam Ribosomal protein L13 111 229 IPR005822 GO:0003735|GO:0005840|GO:0006412
Stsc181862g00004 249 ProSitePatterns Ribosomal protein L13 signature. 203 225 IPR023563 GO:0003735|GO:0005840|GO:0006412
Stsc181862g00004 249 SUPERFAMILY Ribosomal protein L13 107 240 IPR036899 GO:0003735|GO:0005840|GO:0006412
Stsc181862g00004 249 Hamap 50S ribosomal protein L13 [rplM]. 113 239 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181862g00004 Stsc-Chr181862 15366 18527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181862g00004 115 248 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 32.593 6.48e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181862g00004 K02871 - gmx:100305981 383.645