Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181856g00003 ATGGATGCATCTCACGTTGCCAAACTAATCTCCCAAGCCAACCGCTTCCCGGAGACTAAGGCCAACTGCCTCGCAACACTTAGATCCATCGCATTCTTCGAGAGGAATAACAAGTCCTGTTTCGATTCTGCAGGTGCAATGCAATTCTTAGCTGCAACCATGATGAAGAAGAACGATAACAGCAGCACCGAAGAAGAAGAAGAAGAACAAGATCTCGCTGAAACTGCTATTGAGATCTTGTTTCATCTTGACCTCTCGGAGAATCAGATCAAGAAACTCATCAACAACGAAAGCCTTCGGTTTCTTGAATCGCTGCTGCAAGCCTTGAAGCACGGGAGCTGCCAATCAAGAGCGTACGCAACACTGCTGTTGAAATCAGCATTTGCAGTTTCAAATCCGATCCAGCTGATCAGCGTGAAAACCGAACTATTCGTTGAAATCGTGAGAGTGATACGCGACCGTATATCGCAGCAGGCTCACAAGGCAGCATTGAAGATTATGGTTGAGCTCTGTCCATGGGGAAGAAACAGAATCAAGGCGGTGGAAGCCGGCGTGGTGTCGGTCCTCGTGGAAGTCCTTCTTGATTCAACGGAAAGAAGAACGTGTGAGCTGGCGTTAATGGCGTTGGATCAGCTTTGCGGCTGCGCGGAAGGGCGAGCTGAGTTGGTGAACCACGGCGCGGGGATCGCCGTGGTGTCGAAGAAAATCTTGAGAGTTTCACGCGCGGCGAGTGAGAGAGGAGTGAGGGTATTAGCGTCAATTTGTAGGTACTGTGGGAGCGGGAGAGTGGTTCAAGAGATGCTACAGGTTGGTGCCGTCAACAAGCTTTGTTTGGTGCTTCAAGTTGATAGCGGTTTGAAGAGTAAGGAGAGGGCTAAAGAGATTCTCAAGTTGCATTCTAATGTTTGGAAGAATTCACCATGTATTCCTCTACCTTTGTTATCATCATATCCATGA 957 0.4848 MDASHVAKLISQANRFPETKANCLATLRSIAFFERNNKSCFDSAGAMQFLAATMMKKNDNSSTEEEEEEQDLAETAIEILFHLDLSENQIKKLINNESLRFLESLLQALKHGSCQSRAYATLLLKSAFAVSNPIQLISVKTELFVEIVRVIRDRISQQAHKAALKIMVELCPWGRNRIKAVEAGVVSVLVEVLLDSTERRTCELALMALDQLCGCAEGRAELVNHGAGIAVVSKKILRVSRAASERGVRVLASICRYCGSGRVVQEMLQVGAVNKLCLVLQVDSGLKSKERAKEILKLHSNVWKNSPCIPLPLLSSYP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181856g00003 318 SUPERFAMILY ARM repeat 102 283 IPR016024 -
Stsc181856g00003 318 PANTHER WDSAM1 PROTEIN 3 310 IPR045185 GO:0061630
Stsc181856g00003 318 ProSiteProfiles Leucine-rich repeat profile. 79 100 IPR001611 GO:0005515
Stsc181856g00003 318 Gene3D - 4 307 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181856g00003 Stsc-Chr181856 27653 28661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181856g00003 4 318 U-box Gene Family AT2G35930 48.276 2.00e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181856g00003 - - gmx:100786877 407.527