Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181854g00002 ATGGCTGAAAATCTTTATGGTGGAGCTTACCTCTCTTCCTTTGTTGATTCTATTTTAGACAACCTGTCTAAGATACTTGACGATGGCACTGTCCTCAATGGAAACTACTCTGCCATGGAGTCGCTTCAAAGGTTGGAGGAATGTCTGAGTGATGTTGCTCATGTGCTTGATGATGCTGAGCTGAAGCAGTTCACTGACAAGAGACTGCTGTTGGATGATGATGATACTGTTGATGGTGATATATCTGTGATTCCCATTGTTGGCATGGGTGGGATAGGAAAGACCACTTTGGCCCAATTGGTTTACCACGACGACAAAGTGAAGGAGATGTTTGATTTTAGAGGTTGGGTTTGTGCGTCTGAGGAGTTTGATGTTGTGAAGGTCACCAAGGCTATAATTGAGGCTATAACTTCGAGTTCTGGTAACTTGACAGATTTGAATTTACTTCAACAAGATCTAAAGGAGAAGTTGTCCAAGAAAAAGTTCTTTGTTGTCTTGGACGACGTATGGAATGAAAGTTATGATGATTGGAATATGCTTCTAAAACCTTTTCAAAAAGGGGTTAAGGGAAGTAAAATTCTCATCACTACTAGAAGTAAAAAAGTGGCTTCTTTGGTGGAAACTGTTTCACCTCATGAACTAAGGTCGTTGTCCGATGAAGATTGTTGGTTGGTGTTTTCAAAACATGCACGTCTTTCAACTACTTCCATGGAGAATCCAACTCTGATAAAAGTCGGCAAAGATATCATAAAGAAGTGTGATGGATTGCCCTTGGCAGTACAAGCCCTTGGAGGTCTATTGCGTGGAAATTCTGATGTTAAGTATTGGAATCATTTGCTGAAAAGTGAGATCTGGGGACTCTCCGATAGTAGAATAAATGTTGTTCCAGCATTGAGGATAAGTTACTATTTTCTGCCATCATATTTAAAGCGGTGCTTTGTTTATTGTTCCTTGTATCCCAAGGACTATGTGTTTAGCAAAGATGAATTGATATTCAGTAATAAAAATACATTTGTGATGCATGATCTTGTGCATGATTTGGCAATGAGCTTTGCTGGAGAATTCTATGTCAGAGCTGACGTGTTTCAGAATGCAGCCGAGGTTGATACTAAAACCCGTTATTTTTCACATAATGCCAGAGGCAGTAATGCAGTGGCAGAACTTTTGGGAGTCTGTGATCGTGTGAAACATACAAGGACATTTCTTGGACCCCCTGGGTCTCCGTGTTTACCATCCAATATAGAAAATGCACCTTGTATCTTGTTGTCAAAGTTGCCGTACCTAAGATCTTTGTCGTTCAAAAACATTCATCCTGTATCACTGCCGGATTCAATAGGTGGGTTGATTCATCTGCGCTACTTGGATCTGTCTGACTCCCGCATCGTGACATTGCCAGAGTCATTGGGTGAGCTGTACAATTTGCAGACCTTGAAGCTGATTGGGTGTAATCATCTAGAAATGCTTCCGGTTAGCATGAAAGATCTTGTAAATTTACGTCATCTTGATATTAGACGTACTAATTTGCATGAGATGCCGAAAGGCATGAACAAGTTGAAAAAATTGCAGTTTTTGAGTGACTATGTGATTGGGAAGCACGGAGAGAACAAGATTAAAGAACTGGGAGCACTTGCAGATCTACACGAATCAATTCACATTAGCAACTTGGAGAACGTGGTCGATAGCAGTCAAGCTTCAGATGCAAGAATGTGTGATAAGGATGGCATTGATTCTATGAAGTTGAGTTGGTCGTGGAATAGAGACGAGAATATGGTGGATTCCCAAATAGAAGAAGATATTCTGTACAAGTTACGACCTCATAATAATTTGAAAGAACTAGAAATCATTGGTTACAGGGGTACAATATTACCAGATTGGTTGGGACATTCTTCTTTCCACAACATCACCGATATAAAACTGGGCGGTATGTTTCAGGATGGTTTCAAGAATTGTCGTAGGCTTCCTTCACTTGGCCAGTTGCCCTCTTTAAAGCACCTCACAATTTATAATTTTGAAACGCTTGAGATTGTGGGTGCTGAGTTTTATCAGAATGATGAATCTTGTTTGGAGACACCATTTCCGATGCTTGAAACTCTTTCATTTGACTCAATGCTTTGCTGGAAGGAGTGGCAAACAATGAAGTTCAATGTATTTCCACGACTTAGGGAGCTTGTCATAAGGGAGTGTCCCATGTTGAGAGGAGATCTTCCCAATCACTTACCATCTTTGCAATCACTTCAGACTGTGGATTGCGAGCAGCTCAGTTATTGTCTTCCAAGAGCACTTGCGATGACATCTTTAAGCATAACTGGTAGCAATAAAGTTAGAATTGGGGAGCTACCTTCTTTATTGCCAGATGTAACAGTTACAGGAAACCATCAAGTGGAGTATGTGTTAGAGGCCATTACAAACATACAGCTGACTTGCCTCACGTCTTTAACCATCTCAGATTGTTCATCCCACATGTCGTTTCCAGTGAGTAGTATTCCCGCATCACTACAACAGCTGAAGATATTGGACTGCAGAAAATTACAAGTCCGAATGGATGGGCAACATCACTCTCTGCAGCAACTATATATAAATAACAGCTGTGATTCAGATACATCCTTCTCCTTGTTGGATTCCTTTCCTAATCTCATGAGTGTTGAAATCTGGAACTGTGAAAAGATGGAGTGTATTGTGGTGTCAGGCTCTCTTTCATGTCTCCGTTCTTTCAGTATCCGGGAATGTGGGAGTGTGAAATCCATGTCGACTCTATGGATGGCAGCACCTCAACTAGAAGTTCTCAAAATAAAGGGTTGCAGAGAGATGGATTTGTCTGCTACAGGTGATCCACACTGTAGCCTGAGATCTCTTGAAATCTCCTACTACGAGAAACTGGGCAACTCTGCAGCATTCATGAATTCGCAATTTCATGGGCTTACTCGTCTTCGGATTGATGGTGAAGACGACGAGAGTGGGAAGTGTCTCCCAAAAGAAGGTTGGTTGCCTGCCTCCCTTGAGTCTCTGGAACTGATTAGTATTGAAAGTATGGAAACCTTGGAATGCAAGGGACTTGCCCACCTCACCTCTCTCAAAGAATTATCTATTTATTTTTGTCCCAAGTTGGAAAACATTGATGGAGAAAAGCTACCTGCTTCTCTGATAGAACTCGCTATCATTCAAACCCCTTTGGGTGTACGGTGCCAGATGAAGGATCCACAAATTTGGTCCAAAATTTCCCACATCAAAGAAATTGGAGTTGATCGCCAATGGTTTTGGCTATCCGACTCTCAACAAATATGTACTATTTCCTATTGA 3297 0.4128 MAENLYGGAYLSSFVDSILDNLSKILDDGTVLNGNYSAMESLQRLEECLSDVAHVLDDAELKQFTDKRLLLDDDDTVDGDISVIPIVGMGGIGKTTLAQLVYHDDKVKEMFDFRGWVCASEEFDVVKVTKAIIEAITSSSGNLTDLNLLQQDLKEKLSKKKFFVVLDDVWNESYDDWNMLLKPFQKGVKGSKILITTRSKKVASLVETVSPHELRSLSDEDCWLVFSKHARLSTTSMENPTLIKVGKDIIKKCDGLPLAVQALGGLLRGNSDVKYWNHLLKSEIWGLSDSRINVVPALRISYYFLPSYLKRCFVYCSLYPKDYVFSKDELIFSNKNTFVMHDLVHDLAMSFAGEFYVRADVFQNAAEVDTKTRYFSHNARGSNAVAELLGVCDRVKHTRTFLGPPGSPCLPSNIENAPCILLSKLPYLRSLSFKNIHPVSLPDSIGGLIHLRYLDLSDSRIVTLPESLGELYNLQTLKLIGCNHLEMLPVSMKDLVNLRHLDIRRTNLHEMPKGMNKLKKLQFLSDYVIGKHGENKIKELGALADLHESIHISNLENVVDSSQASDARMCDKDGIDSMKLSWSWNRDENMVDSQIEEDILYKLRPHNNLKELEIIGYRGTILPDWLGHSSFHNITDIKLGGMFQDGFKNCRRLPSLGQLPSLKHLTIYNFETLEIVGAEFYQNDESCLETPFPMLETLSFDSMLCWKEWQTMKFNVFPRLRELVIRECPMLRGDLPNHLPSLQSLQTVDCEQLSYCLPRALAMTSLSITGSNKVRIGELPSLLPDVTVTGNHQVEYVLEAITNIQLTCLTSLTISDCSSHMSFPVSSIPASLQQLKILDCRKLQVRMDGQHHSLQQLYINNSCDSDTSFSLLDSFPNLMSVEIWNCEKMECIVVSGSLSCLRSFSIRECGSVKSMSTLWMAAPQLEVLKIKGCREMDLSATGDPHCSLRSLEISYYEKLGNSAAFMNSQFHGLTRLRIDGEDDESGKCLPKEGWLPASLESLELISIESMETLECKGLAHLTSLKELSIYFCPKLENIDGEKLPASLIELAIIQTPLGVRCQMKDPQIWSKISHIKEIGVDRQWFWLSDSQQICTISY 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181854g00002 1098 SMART LRR_typ_2 495 518 IPR003591 -
Stsc181854g00002 1098 SMART LRR_typ_2 448 471 IPR003591 -
Stsc181854g00002 1098 Gene3D - 40 210 IPR027417 -
Stsc181854g00002 1098 Gene3D Ribonuclease Inhibitor 577 763 IPR032675 -
Stsc181854g00002 1098 Gene3D Ribonuclease Inhibitor 940 1066 IPR032675 -
Stsc181854g00002 1098 Gene3D Ribonuclease Inhibitor 409 564 IPR032675 -
Stsc181854g00002 1098 Gene3D Ribonuclease Inhibitor 764 939 IPR032675 -
Stsc181854g00002 1098 SUPERFAMILY L domain-like 796 1073 - -
Stsc181854g00002 1098 SUPERFAMILY L domain-like 408 840 - -
Stsc181854g00002 1098 Pfam NB-ARC domain 80 281 IPR002182 GO:0043531
Stsc181854g00002 1098 FunFam Probable disease resistance protein At1g61300 40 210 - -
Stsc181854g00002 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 316 IPR027417 -
Stsc181854g00002 1098 Gene3D - 216 305 IPR042197 -
Stsc181854g00002 1098 PRINTS Disease resistance protein signature 469 485 - -
Stsc181854g00002 1098 PRINTS Disease resistance protein signature 83 98 - -
Stsc181854g00002 1098 PRINTS Disease resistance protein signature 253 267 - -
Stsc181854g00002 1098 PRINTS Disease resistance protein signature 156 170 - -
Stsc181854g00002 1098 PANTHER DISEASE RESISTANCE PROTEIN RP 66 709 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181854g00002 Stsc-Chr181854 15646 19989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181854g00002 80 348 WRKY Transcription Factor Family AT5G45050 25.914 5.65e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181854g00002 - - aip:107626318 1384.39