Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181852g00004 ATGTCTTACTACCAATCAGCAGAAAGAATCTCCGATCGATCATGGAAGTACGATGTGTATTTTAGTTTCCTAGGCCAAGACAGCTACGGATTCAGCTCAGATTTGTATCAAGATTTCAGGAATGCTGGGATTCATGCTTTCATTGACGACGAAGACGAGGGGCAGGAGCTTCAGAGTGGAGACCAGATGACATACACAGTGGCTCAAGCAATCGAAGGTTCTAGGGTTTCGGTTGTTGTTCTGTCACAAGATGTACGCCACCAGAGAGGTCCTTTTGAAAAAATTTTTCAAAGTCATATGGATAGCTTCTCAGATGAGAGTGAGAGTGAGAAAGTTCTCGCATGGAGGGCAGCGCTCACTCAAGCTGCTAACATTGCCGGATTTGAAATCAGCACAAACAGAAATGAAGTTGAAGTTATCAGAAAGATTGTTAGTCATGTAAGGGCTCTGCTGGATTCGGAAGATGAGTTCATCAAATTAGATTATCCAGTGGGAGTACAATCTCGTAAGGAAGAGGTGATTCAACTATTACACTCTCATACAGCAGAACATGTTGTGCTAATGGGGATATGGGGGATGATAGGAGTGGGTAAAACAACCATTGCCTCCTTTGTTTATAATCAAATTCGTCATGATTTTGATGGTCCAATGTTCCTCCCAAACATTAGGGAGAAGTGGAAGACAAACAAAGTTTTTCTACAAGAAGAACTGTTGAATGGTATTTGCAAAGAAATAGAATGGATAAAAATAAGAGACATCCAATCAGGGATAACTGTAATAAGGGAAAGACTTGGCCTAAAAAAGGTGCTTGTTGTACTTGATGATGTAGATAATATAAACCAGTTGCTAGCCTTGTGCGGAAGCCGAGAATGGTTTGGTGCAGGGAGTATAATAATCATCACAACAACAGATAGACATCTGCTTCGCACCATTGGAGTTGACTACGTCTACCAAGTGAAAGAATTGGATTACAATGAATCTCTTGAACTTTTTAGCTTCAAACAGTTTGATAGAATTGCAAAATAA 1026 0.4035 MSYYQSAERISDRSWKYDVYFSFLGQDSYGFSSDLYQDFRNAGIHAFIDDEDEGQELQSGDQMTYTVAQAIEGSRVSVVVLSQDVRHQRGPFEKIFQSHMDSFSDESESEKVLAWRAALTQAANIAGFEISTNRNEVEVIRKIVSHVRALLDSEDEFIKLDYPVGVQSRKEEVIQLLHSHTAEHVVLMGIWGMIGVGKTTIASFVYNQIRHDFDGPMFLPNIREKWKTNKVFLQEELLNGICKEIEWIKIRDIQSGITVIRERLGLKKVLVVLDDVDNINQLLALCGSREWFGAGSIIIITTTDRHLLRTIGVDYVYQVKELDYNESLELFSFKQFDRIAK 341
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc181852g00004 341 SMART till_3 16 125 IPR000157 GO:0007165
Stsc181852g00004 341 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 128 IPR035897 -
Stsc181852g00004 341 Pfam NB-ARC domain 168 337 IPR002182 GO:0043531
Stsc181852g00004 341 Gene3D - 84 157 IPR035897 -
Stsc181852g00004 341 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 337 IPR044974 GO:0006952
Stsc181852g00004 341 Pfam TIR domain 16 84 IPR000157 GO:0007165
Stsc181852g00004 341 Gene3D - 158 315 IPR027417 -
Stsc181852g00004 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 337 IPR027417 -
Stsc181852g00004 341 PRINTS Disease resistance protein signature 187 202 - -
Stsc181852g00004 341 PRINTS Disease resistance protein signature 263 277 - -
Stsc181852g00004 341 Gene3D - 10 83 IPR035897 -
Stsc181852g00004 341 ProSiteProfiles TIR domain profile. 15 151 IPR000157 GO:0007165
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc181852g00004 Stsc-Chr181852 11475 13899 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181852g00004 115 331 WRKY Transcription Factor Family AT4G12020 31.507 1.15e-24 103
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181852g00004 - - ahf:112727939 387.497