Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181852g00003 ATGGAAGTATACCACGTGTATATGAGTTTCCGAGGCGAGACTCGCTTCGGATTCACCTCACATCTGTATCAAGCTTTCAGGAGGGCTGGAATTCATACTTTCAAGGACGACGATATGGACCTTGGGATTGAAGAGGAGATAACATACACACTGATTCAAGCAATAGAAGCTTCTAAAGTTTTCGTTGTTGTTTTCTCAGAAAATTATGCTGGTTCAAGTTGGTGTCTGGACGAGCTGACGAAAATAATGGAGTGTAGAAGCAGTATAGGTCAGACCGTCGTTCCGGTGTTCTACCGTGTTGATCCCGCAGATGTACGCCACCAGAGAGGTCCTTTTGAAGTAGCTTTTCAACGTCACATGAATAGATTCTCAGATGAGGGTGAGAGAGTCCACGCATGGAGGGCAGCGCTCACTCAAGCTGCTAACCTTCCTGGATTTGAAATCAGCGTTGACCAATATGAACCTGATATTATCAAAAAAATTGTTAGACATGTATCTGGGCTACTAGCAGTTTCTCAAGTGTTCTTCAGGACAAAGCATCTAGTAGGAGTACAATCTCGCACGGAAGAAGTGATTCAACAATTACATTCTCATACATCACCAGATGGTGTCGTGCTAATGGGGATATGGGGGATGGGAGGAGTGGGTAAATCAACCATTGCCAATGCTGTTTATAATCAAATTCGTCACGATTTTGATAGTTCAATGCTCCTCACAAACATTAGGGAGGTGTGGGAGAGAAACCACCAGGTTTTTCTGCAAGATCAACTATTGAATGGTATTTGCAAAGCAGAGATGCATATACAAAACATCGATTCAGGGGTAGCTGAATTAAAGAAGAGACTTCGCTTAGAAAGGGTATTCATTGTACTTGATGATTTAGATAATGTAAACCAGTTGAATGCCTTGTGTGGAAGTCGAGAATGGTTTGGTGCAGGGAGTATAATAATCATCACAACAAGAGATAGACGTCTGCTTCGTATGATTGGAGTTGATCACGTCTACCAAGTGAAAGAAATGGATTCCAGTGAATCTCTGGAACTTTTTAGTTGGAATGCATTTAAGCAAGCAAGTCCTTTAGAAGAGTTTGCTAAACTTACAGAAGATGTAGTTGCATATTGTGAGGGATTGCCATTAGCCCTTGCAACAATTGGTCGTGAATTGTTTGGAAAGATGAAAGATGAGTGGGAGAATGTATTAGGTGGACTCAAAAGGCTTCCCCATCCGGATGTACACAAAGTCTTGAAAATAAGTTATGACGGCTTAAATGATGACAGACAGAAAGAAATATTTCTTGCTATAGCTAGCTTTTGTATTGGCATGGAGAAAGGGGAGGTACTGCAAACACTAAAGGATGCCTTTGGACATAGAGAAAATGGAATCAGTTTCCTTGAAGAGCCGAGTCTTATAACATTTGATCATCAAGACAGAGTTCAAATGCATCCTTTGCTACGAGACACGGGAAGAGAAATAGTTCGAGAACAATCACGGACTGAGGCTCAGCGAAGCATATACGATGTTTTTGTGAGTTTTCGAGGCAAGGACTCTCGTTCAGGATTTACATCACATCTCCATTCATCTCTCCAAAATGCTGGAATTACTGTTTTCAAGGATGATGATGATGTTGATGGACTTCAAAGGGGAGAACGGATTTCAATCGCATTGCTAAAAGCAATTGGACTTTCTGCATGTTCTGTGCTTGTTTTGTCAACCCACTATGGTGATTCAAAATGGTGCCTGCAAGAGCTTGAGAATATCATGGTATGCCATAGAACAAAAGGTCATTTGGTTTTCCCTGTATTCTTAGGAGTAGATCCTGCAGATGTACGCCATCAAAGGAAAGAGAGTGACTTTGGGAAGGCTTTTGAAAGTCTTATAAATGGTAAAAGACCGGTGGAAAAAGATAAGGAGCAAAGATGGAGAGAAGATCTTCGTGAAGTTAGTAACTTTTCAGGGATGACTGTACAAAACTACAGTGTTGGAGTATCTTGCAGGTACCCTCAAACCACCGTCCCGGAGCACACAGGGAGTGTTCAAGGAGCTCTGGACCCCAATTCCTCTAGGGTCAAACTCCCCAAACAGTTTGGGAATGAAAGTGAAGATATCAAAAGAATTGTTAAACATGTTACTCGTTTACTGGATAAGACAGAATTATTCGTTGCAGAGCATCCAGTGGGGGTAACCCCTCGCGTGCAAAAGGTGATTGACAAATTACACAACAATCAAACAACTAGAGATGTTCTGATACTTGGGATCAAGGGCATGGGGGGCATTGGTAAAACAACTATTGCCAAAGCCATCTATAATCAAATGTGTCGCGATTTTGAAGCCAGGAGCTTCCTCCAAAACATTGGAGAAACTTGGCAGCAAGATAATGGACAGGTTCGTTTGCAACAGCGACTTCTTGAGGATATATTCAGAGCAACAAGGATACATATACATAGCATTGATTTTGGGAAGCAAATTTTAATGGAAAGGCTTGGTGCTAAAAGGGTACTCATTTTGCTCGACGATGTGACTGATTCGGACCAACTCAATGCTTTGTGTGGTGGTGGTAAATGGTGTCGTCCTGGAAGTGTAGTAATCATCACAACAAGACATGATAATCTTCTTCCAGTGTGCGGCCTCACAGAGGATATAAAAGAGATGAATGAGGCTGAATCCCTGGAGCTTTTTAGCTGGCATGCATTCAAACAAGCATGTCCACCAAAAGAAGATTTTGTCAAGCTATCTAAGGATGTTGTTGAATATTCTAATGGATTGCCACTCGCTCTGGAAGTTCTAGGGTCCCATTTGTTTGGTAGGGAAATAAAAGATTGGGAAAGTACATTGGAAAGTCTGAAATCAATTCCCCCTTGTAAGGTCCAGAAGAAACTACAAATAAGTTTTGATGCTTTAAGTAATAATTATGAAAAAGAAATATTCCTTGACATTGCATGTTTTTTCATTGGGATGGATCGAAATGATGTTGTCCAGATATTGAAAGGTTGCGGGCTACTCACTGCAGAAAATGGAATAAGTGTCCTTAAAGAGCGAAACCTTATAACTGTTGATAGCAATAATATGCTTGGAATGCATAACTTGTTAAGAGATATGGCAAGAGCAATAATTTGTGAGCGATCACTTGAACTTGAAAAGCGTAGTAGATTATGGTACGATGAAGATGAAGCAGTGCTGGAACTATTAGAGAATCATGAGGGAACAGATTTAGTGGCTAAGGGATTGAGTTTGAAGTCGCCAACCACCAATTCAATTCCATTGAGAAAAAAAGCATTTAAGAATTTGACTAGACTTAAATTGCTTCAACTCGCTGGTGTACAACTTAATGGAGAGTTCAAATATCATTCAGGATACCTTAAATGGATGAGTTGGCATGGATTTCCTTTGAGACACACTCCCGTAGACTGCCACCAACCAAATATAGTTTCCATTGAGTTAGAAAGCAGCAAACTCCAAGTTCTGTGGAAGAAGTCCCGGTTGTTAAGACAGCTGAAGATTTTGAATCTTAGTCATTCTCATGACTTGATCAAAACCCCAGATTTTTCATTCCTACCCAATCTTGAGAAGTTAGTACTAAAGGATTGTACAAAACTGTCGTCCATTTCCTATACCATAGGAACTCTACAAAAAATCCTTCTCATCAATCTAGAAGGTTGTACAGACCTTTCTGGACTTCCAAGAAGAATGTACAAGTTGAAATCTCTTGAAACTCTCATCCTTTGTGGGTGTTCAAAGCTTGAAAAGTTAGAAGAAGATTTGGAACAAATGGAATCTTTGGCGGTGCTGAGAGCAGATAACACTGCCATTGTACAAGTGCCCCATGCGCTAGCAAGATTAAGAAACATTGAACATGTTTCATTGTGTGGCTATGAAGGATTGGCATGTGATGTGATTCCTTCAGTTATGTTCTATTTATGGACTTCTCCAAATATGTTGTCAGGCTCCTCGTCAACTGTTTTCACTTGTGGGAAGTATTACGGTCCACGGCTTCAGATAAAGGGAGATGTATCTGTGGATACCGACAATGTGGCAAATTCCAAAGAATTGGGGATGAATTTTTCTCAATCAAAATCTTCTTTGAATTTCCTTTTGATTCAAATGGGGTTGGACAACTCAGTCACAGAAACAATTCAAAACACCAGTTCACTGAACAATGAGCTTGGAGATTTCCTGCTCCCTCATCCTAGTTTGTTAACAATCATTGGTGAAGGTTCCTCTGTGATTTTTCAAGTCCTTCAGATGAATGGGCGTAACTTGAAGTCCATGATGTTGCGCATTGTTTTCTATTCGTCTTCAACATTCATCCCTACAACAGAAGGTCTTATTCTTGAAAATGTGTGGATCTCAAATCTCACAAGGGACACATCCAATATATATAACGGAGATAAGTTAGCTTCATTGAAAGATGAGGACAGGGAGATCCTAATGTCAAATCTTGAACCTGGTGACACAGTGCAGGTTGATGTTGCTTTAGGGTATGGGTTCATTGTGAAGAACACCATAGTTTATCTCATATATGATGATGAGCCACCAACTGAGGAAAACTCAGAGCAATGCAATGATGACGAGGATGATAACATTTCTTCTGTTGGTGGTATAGTTGTAGCTGATGTGGATGAAGGTGCTTTGAGTGTTGATGTCATTGCAACAGATAATGATGAAGATCTTACTGTTTTCGGTGTTCATGATGTGGTAGCTGGTATGAATGAAATTGTTTCTGGTGTTGATGCTATGGAAGAAGATAAGGATGATGTTACTGTTGCTAGTGTTGATGATGTTACGGTAGCTAATCTGAACAGAAATACTACTAGTACTGATAACATGACACCGATTTCTAATGGTTTTGGTGCTAATGAAATTGCTTCGAGTGTTGATAATAATGATGATGATGTTACTGCCATTGGAGATGAAAAAGTAGGTAATAATCTCTATGTTGCTGCTGTGGTGGTAGAAAGACAGCAAGTTGAAACCATTTCAACTACCAAGAGTTTTGAGTCAAAATCAGAAGGACTTATTCCCTTAGTTCAGGCTCCTATTGGTTCTAACACAGATTCTGAGATTACTTTGACTAATAAGGAGACAGTAGAAAAAACACAGGAATCAATCAGAATTTCCCAATCAATTACGGAACTTCGTGTCAATCCTACATCACCAGTTACCCCCATAATACCTATGACGGTTGCAGAAGGAGATGAGCTTCATGAAAATATTGATTTGCTTATTTCCGAGTTGGATGAAACATTGTCAGAGAGCTATATTATGTACCCTACTTCTGGATCATCACAAGTTCCAAGTCACTCTGTGATTTCAATCTTTCAGCAAATGCAACTTCTTTTGGATAATGAACTAGAGGCTTTGGTAGAAGATGGTAACATCAAGAATCAGCTTCTTGGCTACATGGCTCAATTAGGCCAAATAATGGAGTCATCACAAGTTCCTAAAGATCTTCTTTCATTGGTTACTAAGATTAGGCACTTCTATGAAGATTTTCTCAATGATTTTCCGTCTGATCAAGAAGTGTTACACAATCATCAAAGATTAATTGATTCAAAGAATGGGCTTCAAGAGAAGTTAGAAGCGGTAAAGGCCAAACAGGAACACTTTTCTGCTTCAATTTCTAAAGGAAAAGAGAGGGTCAATGAGATGTCAAAAGAAATCAATGAATTGGAGGTGCAACTAAAAGCATTGCATGAGAAGAGGAATAAGTTACAATTCACTGTGGAACGTTGTGAGATTGAATCTGTCAACATCAATAGGAAAATGGAAACTTTGGTAAAAGAGAATGAAAAAGTTGTGAACGCTCTCAAAGAATCAGATTCTGCATTCAGAAAGGCTGAGGTGTCAAAGCAGAGTTATGAGAGGAAGCTAGCCGTCTTGAAGCAAGCTCTTCTTGGCAACACTAAACATTAG 5910 0.3983 MEVYHVYMSFRGETRFGFTSHLYQAFRRAGIHTFKDDDMDLGIEEEITYTLIQAIEASKVFVVVFSENYAGSSWCLDELTKIMECRSSIGQTVVPVFYRVDPADVRHQRGPFEVAFQRHMNRFSDEGERVHAWRAALTQAANLPGFEISVDQYEPDIIKKIVRHVSGLLAVSQVFFRTKHLVGVQSRTEEVIQQLHSHTSPDGVVLMGIWGMGGVGKSTIANAVYNQIRHDFDSSMLLTNIREVWERNHQVFLQDQLLNGICKAEMHIQNIDSGVAELKKRLRLERVFIVLDDLDNVNQLNALCGSREWFGAGSIIIITTRDRRLLRMIGVDHVYQVKEMDSSESLELFSWNAFKQASPLEEFAKLTEDVVAYCEGLPLALATIGRELFGKMKDEWENVLGGLKRLPHPDVHKVLKISYDGLNDDRQKEIFLAIASFCIGMEKGEVLQTLKDAFGHRENGISFLEEPSLITFDHQDRVQMHPLLRDTGREIVREQSRTEAQRSIYDVFVSFRGKDSRSGFTSHLHSSLQNAGITVFKDDDDVDGLQRGERISIALLKAIGLSACSVLVLSTHYGDSKWCLQELENIMVCHRTKGHLVFPVFLGVDPADVRHQRKESDFGKAFESLINGKRPVEKDKEQRWREDLREVSNFSGMTVQNYSVGVSCRYPQTTVPEHTGSVQGALDPNSSRVKLPKQFGNESEDIKRIVKHVTRLLDKTELFVAEHPVGVTPRVQKVIDKLHNNQTTRDVLILGIKGMGGIGKTTIAKAIYNQMCRDFEARSFLQNIGETWQQDNGQVRLQQRLLEDIFRATRIHIHSIDFGKQILMERLGAKRVLILLDDVTDSDQLNALCGGGKWCRPGSVVIITTRHDNLLPVCGLTEDIKEMNEAESLELFSWHAFKQACPPKEDFVKLSKDVVEYSNGLPLALEVLGSHLFGREIKDWESTLESLKSIPPCKVQKKLQISFDALSNNYEKEIFLDIACFFIGMDRNDVVQILKGCGLLTAENGISVLKERNLITVDSNNMLGMHNLLRDMARAIICERSLELEKRSRLWYDEDEAVLELLENHEGTDLVAKGLSLKSPTTNSIPLRKKAFKNLTRLKLLQLAGVQLNGEFKYHSGYLKWMSWHGFPLRHTPVDCHQPNIVSIELESSKLQVLWKKSRLLRQLKILNLSHSHDLIKTPDFSFLPNLEKLVLKDCTKLSSISYTIGTLQKILLINLEGCTDLSGLPRRMYKLKSLETLILCGCSKLEKLEEDLEQMESLAVLRADNTAIVQVPHALARLRNIEHVSLCGYEGLACDVIPSVMFYLWTSPNMLSGSSSTVFTCGKYYGPRLQIKGDVSVDTDNVANSKELGMNFSQSKSSLNFLLIQMGLDNSVTETIQNTSSLNNELGDFLLPHPSLLTIIGEGSSVIFQVLQMNGRNLKSMMLRIVFYSSSTFIPTTEGLILENVWISNLTRDTSNIYNGDKLASLKDEDREILMSNLEPGDTVQVDVALGYGFIVKNTIVYLIYDDEPPTEENSEQCNDDEDDNISSVGGIVVADVDEGALSVDVIATDNDEDLTVFGVHDVVAGMNEIVSGVDAMEEDKDDVTVASVDDVTVANLNRNTTSTDNMTPISNGFGANEIASSVDNNDDDVTAIGDEKVGNNLYVAAVVVERQQVETISTTKSFESKSEGLIPLVQAPIGSNTDSEITLTNKETVEKTQESIRISQSITELRVNPTSPVTPIIPMTVAEGDELHENIDLLISELDETLSESYIMYPTSGSSQVPSHSVISIFQQMQLLLDNELEALVEDGNIKNQLLGYMAQLGQIMESSQVPKDLLSLVTKIRHFYEDFLNDFPSDQEVLHNHQRLIDSKNGLQEKLEAVKAKQEHFSASISKGKERVNEMSKEINELEVQLKALHEKRNKLQFTVERCEIESVNINRKMETLVKENEKVVNALKESDSAFRKAEVSKQSYERKLAVLKQALLGNTKH 1969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181852g00003 1969 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 171 - -
Stsc181852g00003 1969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 433 IPR027417 -
Stsc181852g00003 1969 ProSiteProfiles TIR domain profile. 503 648 IPR000157 GO:0007165
Stsc181852g00003 1969 SUPERFAMILY L domain-like 1025 1303 - -
Stsc181852g00003 1969 Coils Coil 1942 1962 - -
Stsc181852g00003 1969 Coils Coil 1872 1913 - -
Stsc181852g00003 1969 Gene3D - 2 170 IPR035897 -
Stsc181852g00003 1969 Coils Coil 1246 1266 - -
Stsc181852g00003 1969 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 505 1293 IPR044974 GO:0006952
Stsc181852g00003 1969 SMART till_3 504 650 IPR000157 GO:0007165
Stsc181852g00003 1969 SMART till_3 3 143 IPR000157 GO:0007165
Stsc181852g00003 1969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 978 IPR027417 -
Stsc181852g00003 1969 Gene3D - 340 423 IPR042197 -
Stsc181852g00003 1969 Gene3D - 882 967 IPR042197 -
Stsc181852g00003 1969 SMART AAA_5 203 341 IPR003593 GO:0016887
Stsc181852g00003 1969 SMART AAA_5 746 887 IPR003593 GO:0016887
Stsc181852g00003 1969 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 146 IPR035897 -
Stsc181852g00003 1969 Gene3D - 721 879 IPR027417 -
Stsc181852g00003 1969 Gene3D - 171 336 IPR027417 -
Stsc181852g00003 1969 SUPERFAMILY Toll/Interleukin receptor TIR domain 497 652 IPR035897 -
Stsc181852g00003 1969 PRINTS Disease resistance protein signature 918 932 - -
Stsc181852g00003 1969 PRINTS Disease resistance protein signature 749 764 - -
Stsc181852g00003 1969 PRINTS Disease resistance protein signature 826 840 - -
Stsc181852g00003 1969 PRINTS Disease resistance protein signature 1159 1175 - -
Stsc181852g00003 1969 SUPERFAMILY "Winged helix" DNA-binding domain 410 504 IPR036390 -
Stsc181852g00003 1969 Pfam NB-ARC domain 730 969 IPR002182 GO:0043531
Stsc181852g00003 1969 Pfam NB-ARC domain 186 406 IPR002182 GO:0043531
Stsc181852g00003 1969 ProSiteProfiles TIR domain profile. 2 169 IPR000157 GO:0007165
Stsc181852g00003 1969 Pfam TIR domain 505 709 IPR000157 GO:0007165
Stsc181852g00003 1969 Pfam TIR domain 4 171 IPR000157 GO:0007165
Stsc181852g00003 1969 Coils Coil 1844 1864 - -
Stsc181852g00003 1969 Gene3D Ribonuclease Inhibitor 1063 1317 IPR032675 -
Stsc181852g00003 1969 Gene3D - 499 720 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181852g00003 Stsc-Chr181852 19834 30327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181852g00003 182 503 WRKY Transcription Factor Family AT5G45050 33.642 2.26e-44 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181852g00003 - - ahf:112749664 2462.18