Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181838g00006 ATGACAAGTGCTTCTCATCTGAATCCCACAGGCACAGGCACAGGCTCAACAAGCCTCATCACAGCATACACTAATCAATGGAACATGTTGGCATACGTAATAAGCTTCATCCTCTTGCTGGTCCTGGTAGAACAGATCAAGTACATGAGGAAGAAGAGGTCAATACCAGGGCCAAGCATGGTCCTCCCCTTCATAGGGAACGCCATACCATTGGTCAGGAACCCAACAAAGTTCTGGGACCAACAATCCAACCTGGCAAAGTCCAGCACAACAGGACTCTCTGTAAACTACATCATCGGTAACTTCATAGTCTTCATAAGAGACACAGAGCTCTCCCACAAGGTATTCGCCAATGTCAGGCCCGACGCCTTCAGGCTCGTGGGCCACCCATTCGGTAAGAAGCTGTTCGGAGAGCACAACCTCATCTACATGATGGGCCAAGACCATAAGAATCTCCGCCGTCGAATCGCACCCAACTTCACTCCAAAGGCTCTTTCCACATACACCGCGCTGCAGCAGATCATAATCCTCAACCATCTTAAGTCATGGGTTCAGCTCTCACACAAAGCCCAAGCCCCGATTCCGCTCCGCGTTTTAGCCCGGGACATGAACTTAGACACCTCTCAGACGGTCTTCGTTGGGCCCTATTTGACCCCCAAGGCCCGCCAGACCTTCGAGAGGGATTACTATCTATTCAACGTCGGTCTCATGAAGCTCCCCATCGACCTCCCTGGCATGTCCTTTCGAAACGCCAGGCTCGCCGTCGATCGTCTTGCTGGAACACTAGCTACCTGCACGGCTTTGAGCAAGAAGAGGATGGACAACGGAGACGAACCTTCCTGCTTAATAGATTACTGGATGCAGGAAACGCTACGAGAGATCCAAGAGGCCAAGCTCGCCGGAGATACTTCACCTCCACCATATTCCTCCGACGCCGAGATTGGTGGATACCTCTTCGACTTCCTCTTCGCGGCGCAAGACGCCTCCACTTCGTCGCTTCTGTGGGCGGTGACGCTGATGGACTCTCATCCTCATGTGTTGGCCAGGGTCAGGGAGGAGGTCGCCGGAATCTGGTCGCCGGAGTCCGACGAGTTGATAACGGCAGACCAGTTGAGGGAGATGAGGTACACTCAGGCGGTGGCTCGTGAGGTGGTGAGATTCCGTCCGCCGGCGACGCTGGTGCCACACATCGCGGCGGTAGATTTCCCGTTGACGGAAAACTACGTGGTTCCGAAGGGCGCGATCGTTTTTCCGTCGGTTTACGAGTCATCGTTTCAGGGATTCCCTGAACCGGACCGATTCGACCCGGACCGGTTCTCGGAAGAGAGACAAGAGGACCAGATTTATAAAAGAAACTTTCTGGCGTTTGGTGCCGGGGCCCACCAATGCGTGGGTCAGAGGTACGCCTTGAATCATTTGGTTCTCTTCATAGCGATGTTCGCCACGTTGATTGATTTCAAGAGAGACAGAACGGACGGCTGCGATGATATTGCATATGTCCCCACCATCTGCCCCAAAGACGATTGCAGGGTGTTCCTCTCTAGTCGTTGCGCACGCTATCCTTCTTTCCCTGCAGTCGTGCACGCCAAATTACCATAG 1599 0.5353 MTSASHLNPTGTGTGSTSLITAYTNQWNMLAYVISFILLLVLVEQIKYMRKKRSIPGPSMVLPFIGNAIPLVRNPTKFWDQQSNLAKSSTTGLSVNYIIGNFIVFIRDTELSHKVFANVRPDAFRLVGHPFGKKLFGEHNLIYMMGQDHKNLRRRIAPNFTPKALSTYTALQQIIILNHLKSWVQLSHKAQAPIPLRVLARDMNLDTSQTVFVGPYLTPKARQTFERDYYLFNVGLMKLPIDLPGMSFRNARLAVDRLAGTLATCTALSKKRMDNGDEPSCLIDYWMQETLREIQEAKLAGDTSPPPYSSDAEIGGYLFDFLFAAQDASTSSLLWAVTLMDSHPHVLARVREEVAGIWSPESDELITADQLREMRYTQAVAREVVRFRPPATLVPHIAAVDFPLTENYVVPKGAIVFPSVYESSFQGFPEPDRFDPDRFSEERQEDQIYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFATLIDFKRDRTDGCDDIAYVPTICPKDDCRVFLSSRCARYPSFPAVVHAKLP 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181838g00006 532 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Stsc181838g00006 532 Gene3D Cytochrome P450 44 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PRINTS P450 superfamily signature 463 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 CDD CYP61_CYP710 92 509 - -
Stsc181838g00006 532 PRINTS E-class P450 group IV signature 374 390 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PRINTS E-class P450 group IV signature 422 440 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PRINTS E-class P450 group IV signature 463 481 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PRINTS E-class P450 group IV signature 55 72 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PRINTS E-class P450 group IV signature 315 341 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PRINTS E-class P450 group IV signature 447 463 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 SUPERFAMILY Cytochrome P450 48 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181838g00006 532 PANTHER CYTOCHROME P450 26 54 480 - -
Stsc181838g00006 532 FunFam Cytochrome P450 61 45 516 - -
Stsc181838g00006 532 Pfam Cytochrome P450 56 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181838g00006 Stsc-Chr181838 30010 32613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181838g00006 28 523 Cytochrome P450 AT2G34500 67.339 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181838g00006 K09832 - gmx:100808148 837.025