Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181838g00003 ATGGAGCGGTACGGCCGGTCCAGCGAGGGTTCCCGGTCTGATCCGTCGCCGGAGTGGACGGGAACCGGCCTTGAAGAGCCGGTGTGGCAAATGGGATTGGGTGCTGCAGAGGAATCTTATCCCCAAAGGCCCGATGAGGCTGATTGTATCTACTATTTGAGGACTGGATTCTGTGGTTATGGTTCCCGCTGCCGTTTCAACCATCCCCGTGACCGTGCCACGGCTATTGGTGCTGCTGCTAGGACTGGGGGAGGGGAGTATCCGGAGCGAATTGGCCAGCCTTTGTGTCAGTATTATATGAAGACAGGGTCATGCAAATTTGGTTCTTCCTGCAAGTACAACCATCCTAGGCAGGCTGGAGGCTCTGCTACCCCTGTGTCACTAAATTATTATGGTTATCCATTGCGACCGGGTGAGAAAGAATGTTCCTATTATGTGAAAACTGGGAGATGCAAGTTTGGTGGAACTTGTAAATTCCATCATCCCCAGCCTGCTGACATCCAAGTTCCCGTGTCATCACTGGTTCCCCCAGTTTCACCTTTACCTGTACCAGTACCTTCACCATTATATCAATCTGTACAGCCTCCATCTGGTCCTTCATCTCAACAAATTGGTGTACTGGTTGCAAGACCACCTCTTCTACCTGGTTCACTAGTCCAGAGCCCTTATGGTCCTGTGGTTCTGTCCCCTGCCATGGTCCCTTTTTCTGGCTGGGGTCCATATCAGGCTCCTGCAGCAAGCCCTGTCCTTCCTTCCAGTACTCCATCCAATGTTGGGTCAGCGCAGCTTTATGGAATAACTCAGGTGCCATCATCACCAGCTGCCTACGCTGGACCTTATCAACCTTCCGGTTCTTCCCTTGGCCTTTCAGGCAGTAGTCAGAAAGAGCAACCGTTGCCAGAAAGGCCAGATCAACCAGAATGTCAGCATTACTTGAAGACAGGGGAGTGTAAATTCGGTCCATCATGTAGGTACCACCATCCACCAGACATGAGTGTGCCAAAAGGGAATGTAATTCTTAGTCCTGCTGGCCTTCCGTTACGTCCGGGGGCACCACCTTGCACACATTTTGCACAGCGTGGAGTATGTAAGTTTGGCTCTGCATGCAGATTTGATCATCCTATGGGATCATTGAGTTATAGTCCATCTGCTTCATCCCTGGCTGACATGCCTGTTGCACCCTATCCTGTTGGTTCTTCAGTTGGTACACTTGCTCTGTCATCTTCGACATCAGAGTTGCGGCCTGAACTCACCTCAGGATCCAGCAAGGAGTCTGTTTCATCTCGGATACCATCTTCAATGAGCACATTGACCGGATCAGTTGGCCTGACTTTGTCGACCAGTGAACCTGTTACTCAACCATCTGCTCAGAGTTCCAGTACATCAGCGGCTGCTGATACTGCCACAACTAGTACTGTCTCCCGCACCTCCTTAAGCACGAGTTAA 1446 0.5104 MERYGRSSEGSRSDPSPEWTGTGLEEPVWQMGLGAAEESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRATAIGAAARTGGGEYPERIGQPLCQYYMKTGSCKFGSSCKYNHPRQAGGSATPVSLNYYGYPLRPGEKECSYYVKTGRCKFGGTCKFHHPQPADIQVPVSSLVPPVSPLPVPVPSPLYQSVQPPSGPSSQQIGVLVARPPLLPGSLVQSPYGPVVLSPAMVPFSGWGPYQAPAASPVLPSSTPSNVGSAQLYGITQVPSSPAAYAGPYQPSGSSLGLSGSSQKEQPLPERPDQPECQHYLKTGECKFGPSCRYHHPPDMSVPKGNVILSPAGLPLRPGAPPCTHFAQRGVCKFGSACRFDHPMGSLSYSPSASSLADMPVAPYPVGSSVGTLALSSSTSELRPELTSGSSKESVSSRIPSSMSTLTGSVGLTLSTSEPVTQPSAQSSSTSAAADTATTSTVSRTSLSTS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181838g00003 481 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Stsc181838g00003 481 MobiDBLite consensus disorder prediction 275 304 - -
Stsc181838g00003 481 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Stsc181838g00003 481 SUPERFAMILY CCCH zinc finger 45 72 IPR036855 GO:0046872
Stsc181838g00003 481 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Stsc181838g00003 481 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Stsc181838g00003 481 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Stsc181838g00003 481 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Stsc181838g00003 481 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Stsc181838g00003 481 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Stsc181838g00003 481 SUPERFAMILY CCCH zinc finger 306 330 IPR036855 GO:0046872
Stsc181838g00003 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Stsc181838g00003 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Stsc181838g00003 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Stsc181838g00003 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 375 IPR000571 GO:0046872
Stsc181838g00003 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Stsc181838g00003 481 MobiDBLite consensus disorder prediction 408 481 - -
Stsc181838g00003 481 Gene3D - 294 336 - -
Stsc181838g00003 481 Gene3D - 42 119 - -
Stsc181838g00003 481 MobiDBLite consensus disorder prediction 1 24 - -
Stsc181838g00003 481 MobiDBLite consensus disorder prediction 283 299 - -
Stsc181838g00003 481 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Stsc181838g00003 481 Gene3D - 120 172 - -
Stsc181838g00003 481 Gene3D - 347 395 - -
Stsc181838g00003 481 SUPERFAMILY CCCH zinc finger 352 378 IPR036855 GO:0046872
Stsc181838g00003 481 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Stsc181838g00003 481 PANTHER PROTEIN PHOSPHATASE RELATED 34 396 - -
Stsc181838g00003 481 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Stsc181838g00003 481 SUPERFAMILY CCCH zinc finger 138 164 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181838g00003 Stsc-Chr181838 13674 18250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181838g00003 1 450 C2H2 Transcription Factor Family AT5G18550 56.129 5.19e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc181838g00003 zf-CCCH 4.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181838g00003 - - gmx:100789405 689.493