Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181838g00002 ATGTCCAACTCCAAATCCTCTGGAACCTCACACACTTACCTGAAAGCACATGAAAAAAACATGAATAATTCTTCATCGTCATCACCTCTTATTATTATACAACGCAACACTTCACCTTCTTGTGGCGCTGAGAGAAGAGGCAGAAGAAAACAGCAATCAGCAGAACCAGGGAGGTTTCTTGGTGTGAGAAGACGGCCATGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAGAGACACTGGCTTGGAACATTTGACACTGCTCATGAAGCTGCTCTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTGGCTTAGCAAGAACAAACTTCATCTACACAACCACACAAAACAACATCACCATCAATGATGGTAATAACAATCTTCTCATCAACTCCATGGATAATAATCCTCATCAGAATTACATCAATAATGTTGATGATGAGAACCCTTCAAAGTTGATGATGAACAGTGATGAGAATTTGTTCTTCTTCTCAGCCACTGATTCCTCCACTAATAACTCTGGCTATCTGGAATGCATTGTTCCTGATAACTGTTTCAGACCTATTTCTTCTACTATTGCCACCAACAACAATAATACCTCAAACTCCTCCATGACAAAGAGCAATAATAAAAATAAAGTGATGAGTTCTGCTGCTTCAGCTTCTAGTGACCAAAATGTTGTTAGCGGCAATAACGCAAACATCATGGAGGCATTGAAGAACATGCCAACAATGACACCAAATTACTTTGGCGGTGGAGAACCTGTTGGTGAAGTAGGATTATTCTGGAACAATCATGATGAACATCAATCATCATGGGACTGCAATAATAATTATTATGGTGAACTTTCAGCTATATTATTTGACAACCAGCAAGAAGGTTGCATGAATGCATTATTGTGTCCTGAGGCTGCTATTCCTTCAACTTCTTCTTCTTTGAGGGATGTTGATGGCTTAGGAATGTAA 978 0.3998 MSNSKSSGTSHTYLKAHEKNMNNSSSSSPLIIIQRNTSPSCGAERRGRRKQQSAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSIKGGLARTNFIYTTTQNNITINDGNNNLLINSMDNNPHQNYINNVDDENPSKLMMNSDENLFFFSATDSSTNNSGYLECIVPDNCFRPISSTIATNNNNTSNSSMTKSNNKNKVMSSAASASSDQNVVSGNNANIMEALKNMPTMTPNYFGGGEPVGEVGLFWNNHDEHQSSWDCNNNYYGELSAILFDNQQEGCMNALLCPEAAIPSTSSSLRDVDGLGM 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181838g00002 325 MobiDBLite consensus disorder prediction 201 229 - -
Stsc181838g00002 325 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Stsc181838g00002 325 Pfam AP2 domain 61 107 IPR001471 GO:0003700|GO:0006355
Stsc181838g00002 325 FunFam Ethylene-responsive transcription factor 2 58 116 - -
Stsc181838g00002 325 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677
Stsc181838g00002 325 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Stsc181838g00002 325 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Stsc181838g00002 325 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Stsc181838g00002 325 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Stsc181838g00002 325 MobiDBLite consensus disorder prediction 1 41 - -
Stsc181838g00002 325 MobiDBLite consensus disorder prediction 1 57 - -
Stsc181838g00002 325 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 231 - -
Stsc181838g00002 325 CDD AP2 58 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181838g00002 Stsc-Chr181838 12045 13022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181838g00002 17 210 AP2-EREBP Transcription Factor Family AT5G18560 42.085 1.99e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181838g00002 AP2 9.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181838g00002 - - adu:107468049 352.829