Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181837g00004 ATGAAAGGTTATGAGCCTCGTTCAAGCTCTTCTTGTGCAGCTTGCAAGTTACTCAAGAGAAGATGCATACCCAACTGCATCTTCGCTCCTTACTTTCGTTCCGATGAGTGCAAGAAATTCGCAAAGGTTCACAAGGTTTTTGGTGCTAGTAATGTCAGCAAGATCCTCATTGAAGTCCCTGAAGAGCAAAGAGAGGACACTGTGAATTCCCTCGCGTACGAGGCTGAAGCCAGGCTCCGTGACCCGGTGTACGGGTGCATTGGAGCCATAGGGCTCCTTCAGAGGAAGATGGTAGAGCTACAGCATGATCTGGCGATCGCTAAAGATCGTCTGGCTCGTGTTATAGCTTCTACTACTTCCTCTGATTCTGTTATGGCCGCTACTACTACTGTTATTTCTAACAGTAATAGTAGTAGTAGCGACCATCTCATGAATGGTTCTTCTTCTTCGCATGTGAGCTTGCCCCCTTTTCCTTGCAGTGATTTCAGTGATAGCTTCTGCCATAGCTCTTCTTCTTCTTCATCTCAATTCTTGACCCGGCATGATCAAGTAGCAGTTGATGATTTCACTCAAATTCCATACATATTTTAA 591 0.4535 MKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIGLLQRKMVELQHDLAIAKDRLARVIASTTSSDSVMAATTTVISNSNSSSSDHLMNGSSSSHVSLPPFPCSDFSDSFCHSSSSSSSQFLTRHDQVAVDDFTQIPYIF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181837g00004 196 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Stsc181837g00004 196 Coils Coil 90 110 - -
Stsc181837g00004 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 139 - -
Stsc181837g00004 196 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181837g00004 Stsc-Chr181837 28917 29657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181837g00004 1 111 AS2 family AT3G11090 80.180 3.55e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc181837g00004 LOB 3.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181837g00004 - - aip:107608172 250.751