Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181837g00003 ATGCCAATGGATGGTTCCACTAAGTCTCTGCTAGATTCATTGGTTAACATTTCCAATGAAGTTAGTTCCATGGAGAAGTCTCACTTTGTTCATGCAAGGAATGTTTCATCCGTGATAAGGAGGATCAAGCTTCTCTCTTCTATGCTTGAAGAGATTCAATTAACATGCTGTTCAATCCCTCCATCTTCAATCATGTCATTCAGTGAGATCTTGTCTTTGATTACAAAATCGAAGCATTTGATTAAAGAATGCAAGGATGGCAGCTGTCTGTGGAGTCTAATACAGTTAGAGTTCATATCCAACCAATTTTACTTGTTGGCAAAGGATATGGCAAATTCCCTTGACACCCTTCCCCTGAGTTTGCTTAGCATCACAAGAGATACACAAGAACAAGTGGAGCTTCTCCACAAACAAGCCAAGAGGGTCGAGTTGTTCATCGATCCTCGCGATCTTCAACAAAGAGACCGGCTTCTAGATGTGATGACCAACAACAATTTACAAAACAAGAACTTTGTTGATGTTGGAAAAGTGGCAGAAATGTTAAGCAACATTGGTTTGAAAACCGCACCGGATTATGATATGGAAATATCGAAACTAGAGGCTGAAGCTCGGAATCAGGCTGGCACAGGAGGACTAATGGAAGTGTCTGATATCAAGAATCTGTTATTTCTGGTTTCATATTCCAAATCATTGATATTCAGGGATGTAGAGAATGGAAGAAATGAAGGAGAGTTCCAGCCACTGTCCGAATTTCAACATATCAAAATTCATGATTTTTGTTCAGCAAGTTCTAAGTCCATGACCCTAAATATTCGTGATGAATTTCGTTGCCCAATTTCGCTTGAGCTAATGAGGGACCCTGTGATTGTATCTTCCGGCCACAGCTATGATCGAACTTCGATAGCACGGTGGATAAACTCCGGGCATCACACTTGCCCCAAAAGTGGACAAAGATTAATTCACACTGCTCTAGTACCAAACTACGCATTGAAGAGTCTTATCCAGCAATGGTGTTATGAAAACAAGCTCTCAGTGAAGGAGCCTAATTCCTCTGTTTTGGAGGTAAACAGCAGCCAGAGGAACTTCAATGTGAATGCTGCCGATCATGCTTCTGCAAACAAAACATCTTTAGATGAGATCAAAATGACAGCAGAGTTTTTAGTTGGAAAACTGGCAACTGGCTCGGCCGACACCCAAAGGAAAGCAGCATATAAACTCCGGTTGCTGGCAAAATGCAGCATCGACAGTCAAAGAATTATAGCTGAGGCCGGGGCTATTCCATTCCTAGTTACGCTACTAACTTCCAATGATCCAAGAATCCAGGAACAAGCGGTGACAGCTCTGTTAAACCTCTCCATCTTTGACAACAACAAGGTTTTGATAATGGCAGCCAAGGGAGCAATGGAAAACATTATAGAAGTACTTGAATCTGGGAAGACAATGGAGGCAAGAGAAAATGCGGCAGCAGCAATATTCAGCTTGACTATGATAGATGACAGCAAAGTAACAATTGGAGCTCATCCAAGAGCCATAAAGGCATTAGTTAAGCTCTTGAAAGAAGGCACTCCTATAGGAAAAAGAGATGCTGCTACTGCACTTTTCAATCTCGCTGTTTACAACAGTAACAAGGCGACAATTGTGAATGCAGGGGCAGTTTCTGTGCTCATTCACATGCTGATGGATGATAAGGCTGGTATCACCGATGATGCATTGGCGGTGCTTGCTTCTCTTCTTGGTTGTTCTCAAGGGCTACAAGAGATAAGGAACAGCAGAGCATTGATTTCCATCCTTATTGAGCTTCTGAGGTTTGGATCAGCCACAGGGAAGGAAAACTCAATAACACTTCTTCTGGGGTTGTGCAAAGAAGAAGGCGAGGTTGTAGCAAGGCGTCTGTTAGTGAATCCGAGGAGCATTCCTTCTCTTCAGAGCTTGGCTGCTCATGGTTCGTTGAGAGCTCGACGAAAGGCTGATGCATTGCTTCGCTTGCTGAATAGATGCTGCTCACAACCTCATCATTCTCTGTGA 2025 0.4286 MPMDGSTKSLLDSLVNISNEVSSMEKSHFVHARNVSSVIRRIKLLSSMLEEIQLTCCSIPPSSIMSFSEILSLITKSKHLIKECKDGSCLWSLIQLEFISNQFYLLAKDMANSLDTLPLSLLSITRDTQEQVELLHKQAKRVELFIDPRDLQQRDRLLDVMTNNNLQNKNFVDVGKVAEMLSNIGLKTAPDYDMEISKLEAEARNQAGTGGLMEVSDIKNLLFLVSYSKSLIFRDVENGRNEGEFQPLSEFQHIKIHDFCSASSKSMTLNIRDEFRCPISLELMRDPVIVSSGHSYDRTSIARWINSGHHTCPKSGQRLIHTALVPNYALKSLIQQWCYENKLSVKEPNSSVLEVNSSQRNFNVNAADHASANKTSLDEIKMTAEFLVGKLATGSADTQRKAAYKLRLLAKCSIDSQRIIAEAGAIPFLVTLLTSNDPRIQEQAVTALLNLSIFDNNKVLIMAAKGAMENIIEVLESGKTMEARENAAAAIFSLTMIDDSKVTIGAHPRAIKALVKLLKEGTPIGKRDAATALFNLAVYNSNKATIVNAGAVSVLIHMLMDDKAGITDDALAVLASLLGCSQGLQEIRNSRALISILIELLRFGSATGKENSITLLLGLCKEEGEVVARRLLVNPRSIPSLQSLAAHGSLRARRKADALLRLLNRCCSQPHHSL 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181837g00003 674 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Stsc181837g00003 674 SMART arm_5 412 453 IPR000225 GO:0005515
Stsc181837g00003 674 SMART arm_5 498 538 IPR000225 GO:0005515
Stsc181837g00003 674 SMART arm_5 539 579 IPR000225 GO:0005515
Stsc181837g00003 674 SMART arm_5 580 621 IPR000225 GO:0005515
Stsc181837g00003 674 SUPERFAMILY ARM repeat 384 663 IPR016024 -
Stsc181837g00003 674 Gene3D - 356 498 IPR011989 -
Stsc181837g00003 674 Pfam U-box domain 272 342 IPR003613 GO:0004842|GO:0016567
Stsc181837g00003 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 354 IPR013083 -
Stsc181837g00003 674 CDD RING-Ubox_PUB 273 324 IPR045210 -
Stsc181837g00003 674 FunFam RING-type E3 ubiquitin transferase 270 344 - -
Stsc181837g00003 674 PANTHER U BOX DOMAIN-CONTAINING 33 668 - -
Stsc181837g00003 674 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Stsc181837g00003 674 FunFam RING-type E3 ubiquitin transferase 480 667 - -
Stsc181837g00003 674 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 509 551 IPR000225 GO:0005515
Stsc181837g00003 674 Gene3D - 504 666 IPR011989 -
Stsc181837g00003 674 Pfam Armadillo/beta-catenin-like repeat 419 452 IPR000225 GO:0005515
Stsc181837g00003 674 Pfam Armadillo/beta-catenin-like repeat 541 577 IPR000225 GO:0005515
Stsc181837g00003 674 SUPERFAMILY RING/U-box 259 345 - -
Stsc181837g00003 674 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181837g00003 Stsc-Chr181837 13053 15077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181837g00003 3 669 U-box Gene Family AT3G46510 37.647 8.41e-121 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181837g00003 - - gmx:100793498 891.338