Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181836g00005 ATGCTTCCTTTTGGGGACAGATTCTACGGGTTCGAGAGCTGGCTAGACCATCCTCACCAACGCGACTCATCATCACCATCACCATCACCCTCTGGGTTTGTTGTTCCTGAAGCACCTTTCAAGGCAACCGATCTATTATGTGACGGTGCAGGCAGATCAGCATCGTCCAAACTGGATAGTAATAATAATAATAGTAGGAAATCAACGGAAGCGTGCAAGAGCCACAGGGAAGCCGAGAGGAGGCGCAGGCAGCGAATCAACGCTCATCTTTCCACCCTTCGCTCCCTCCTCCCTAACACCGCCAAGGCAGATAAGGCGTCGTTGCTGGCGGAAGTGGTAAACCACGTGAAGCGGCTAAAGAAAGAGGCCGATGACGTGGCGAGAGAACCGTCCAAAGCCGATGCAGGAGCTGAACCGTGGCCGTTTCCGGGGGAATCCGACGAGGCAACACTGAGCTACTGCGACGGCGAACCGAACCTGGTGAAGGCGACGCTGTGCTGCGAGGACCGGCCCGGTCTGAACCGGGACCTGACGCATGCGATTCGGTCGGTTCGAGCGAAAGCGGTTCGGGCCGAGATGATGACGGTTGGGGGCCGGACCAAGAATGTGGTGATAATTCAACGCCCACCAGCTTCCGGTGGTGGTGATTCGAAAGAAAGGCNNNNNNNNNNGGAGGTTGGAGCTCTGGAGCGGGCTTTGAAGGCCGTGATTGAGAATCGGGCTTTAGTGGGCTCTGGGATGGGCCGTTTCCTGTTGGGTCAGAAGCGGGCTTGGGATGGTTTTGATTCACGTGATGAGGTTGATTGCACCTTTTTAGTAAACACAGCTGCGAACAAGTAA 840 0.5488 MLPFGDRFYGFESWLDHPHQRDSSSPSPSPSGFVVPEAPFKATDLLCDGAGRSASSKLDSNNNNSRKSTEACKSHREAERRRRQRINAHLSTLRSLLPNTAKADKASLLAEVVNHVKRLKKEADDVAREPSKADAGAEPWPFPGESDEATLSYCDGEPNLVKATLCCEDRPGLNRDLTHAIRSVRAKAVRAEMMTVGGRTKNVVIIQRPPASGGGDSKERXXXXEVGALERALKAVIENRALVGSGMGRFLLGQKRAWDGFDSRDEVDCTFLVNTAANK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181836g00005 279 MobiDBLite consensus disorder prediction 15 83 - -
Stsc181836g00005 279 Pfam Helix-loop-helix DNA-binding domain 72 119 IPR011598 GO:0046983
Stsc181836g00005 279 Coils Coil 109 129 - -
Stsc181836g00005 279 PANTHER TRANSCRIPTION FACTOR BHLH30 59 245 IPR045847 GO:0003700|GO:0006355
Stsc181836g00005 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 119 IPR011598 GO:0046983
Stsc181836g00005 279 MobiDBLite consensus disorder prediction 69 83 - -
Stsc181836g00005 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 131 IPR036638 GO:0046983
Stsc181836g00005 279 SMART finulus 76 125 IPR011598 GO:0046983
Stsc181836g00005 279 MobiDBLite consensus disorder prediction 54 68 - -
Stsc181836g00005 279 Gene3D - 64 128 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181836g00005 Stsc-Chr181836 24367 25752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181836g00005 67 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 43.158 2.83e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181836g00005 HLH 9.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181836g00005 - - aip:107608273 436.032