Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181831g00002 ATGTTAGGTCTCCGCAACGCTGCGAATGTTGTTAACCGCCTTCGTGAAAACCTCTCGGTTTGGGGCATGCGTGCACAGAATATAAACATAGGAGGTGGTGTTGGAGGTGAAATCCCAGACCAGAAGCGTCTCCAGTATGCTCTTCAGCATATCCATGGCATTGGGCGTTCCAAGGCTCATCACATTGTTTGCGAGCTTGGTGTCGAGAACAAATACGTTAGGGACCTTAGCAAGAGAGAGTTGTACTCCCTGCGCGAATTGCTGTCCAAGTACTTGATTGGGAATGATTTGAAAAAATGTGTTGAGAGAGATGTGGGGAGGTTAGTGGGGATTCAGTGCTACAGAGGCATCAGGCACGTCGACGGCTTACCCTGTCGAGGCCAGCGAACTCATACCAATGCCCGCACCAGGAAGAGCCGACCTACTGTTAGGGGAACAAGATGA 444 0.5045 MLGLRNAANVVNRLRENLSVWGMRAQNINIGGGVGGEIPDQKRLQYALQHIHGIGRSKAHHIVCELGVENKYVRDLSKRELYSLRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDGLPCRGQRTHTNARTRKSRPTVRGTR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181831g00002 147 Gene3D - 34 99 - -
Stsc181831g00002 147 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 22 140 - -
Stsc181831g00002 147 FunFam Ribosomal protein S13 100 138 - -
Stsc181831g00002 147 FunFam 30S ribosomal protein S13 34 99 - -
Stsc181831g00002 147 Hamap 30S ribosomal protein S13 [rpsM]. 27 146 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc181831g00002 147 ProSitePatterns Ribosomal protein S13 signature. 115 128 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc181831g00002 147 Gene3D 30s ribosomal protein s13, domain 2 101 145 IPR027437 -
Stsc181831g00002 147 MobiDBLite consensus disorder prediction 127 147 - -
Stsc181831g00002 147 ProSiteProfiles Ribosomal protein S13 family profile. 34 139 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc181831g00002 147 Pfam Ribosomal protein S13/S18 35 136 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc181831g00002 147 MobiDBLite consensus disorder prediction 131 147 - -
Stsc181831g00002 147 SUPERFAMILY S13-like H2TH domain 35 139 IPR010979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181831g00002 Stsc-Chr181831 7669 9018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181831g00002 23 139 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.369 3.08e-06 42.7