Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181828g00001 ATGGCACACCCAACGCAAATTGCCATTCTTGCATCGCTACTTCACCGTGCATCGGACAACATCCTTCAAATGCTTCAAACCACTAGAATGAATAGGAATCGGAACAGAGGAGTTCTAGATCTAACATCAATAATCCTCACGGAACTGACCCCTCTCTACAACGAGATCAAGAATTATAATTACAACGATGACCTTCTTGATCGTCAAAATGACCAGATCAAGGCTCTTATACGGAAACACGATGAAGCGAGCCTGTGCGATTGTTCTTCTTGGTGGCACTTGTGGGACAATTGCTTCTCATGGCTTGTTCCGCATATAAAGAATAATTATAATGATGATGATGATTATTTTGATGAAGCTTTGAGGGAGGAGTTGAATGAGACGCTTGAAAAGTTGAGGGAGATTATTGAGCTGCTTAACTATGGCGGTTGTGGTGGTGTTTTTGAAAGGAGGGGGCCTTGTTGTGTTCCAGAGAAGCGAGGGTTCACGGTGGGGCTGGACGAGTCAATGAGGAAGTTGAAGGCGGAGGTTATGAGGGAAGGCGTGTGTGTCATTGTTTTGACCGGCTTGGCAGGTTCTGGGAAGACCACTTTGGCTACATCGCTGTGTTGGGATCAACAAGTCAAAGGTAAATTCAAGGAAAATATCTTATTCATCACATTCTCGAAAGCACCCAAGTTGAAGATCATTGTAGAGAGACTGTTTGAACAGTGTGGATATCGAGTGCCACTGTTTCAAAGCGAAGAAGATGCAATTAACCGAATGGGAGTTTTGCTGAGGAATATTGGAAAAACTGGTCCAGTTTTGTTGGTCCTTGATGATGTTTGGCCTGGTTCTGAATCCCTTGTTCACAAATTCAAAATTCAATCCTCATCAGATTACAAGATTCTGGTGACTTCAAGAGTTTTATTTCCCAGATTTGGCAACCCATTTATCGTTTTAGAGCCACTTAATCATCAAGATTCATTAACACTTTTCAGTCACTTTGCTCAATTGGAAGATAACTACTCAAATATCCAAAATGAAGATATTCTCCAAAGGGTGGTAAGAGGTTGCAAGGGTTCACCTCTTGCAATTACCGTGATTGGTAGATCAATAAGTAATCAGCCTTATGAATTCTGGCTCAAGATGGTGCAGAAATTGTCACAAGGTCGTTCTATCTTCGATTCCAATGATGAATTACTAAAATGCCTCGAAAATATCTTGGAAATTTTAAAGGATAAGCCTGTGATGAAGGAATGTTTCATGGACTTAGGGCTATTTATGGAAGATCAAAGAATTCCTGTTACAGTTCTCTTTGATATGTGGAGTGAGTTGTATGGAATGGATGATGATGGCATAGAGGCAATGACAATTATCAACACATTGTGCTCTATGAATTTGGCCAATGTCTCAGTTGCAAGGAAAAATGCTTGCGACGTTGAAAACTATTACTACAACAACCACTTCATAGTGATGCATGATCTTCTTAGAGAACTCGCAATTTATCAGAACAATCAAGAAGCAATAGAACATAGACATAGAATGAGCATTGGCATGAACATGATGAACGAACACAATGGCGAGTTATGGCTTGCGGAGAAGCAGCAAGACATGATTGCTGAAATCGTTTCAAAATGTTTGAGATGGTGTGTTAATAATCAACAGGTGCCTCAACAAATCCATGCACGCACTTTGTCAATATCAATTGATGAAACTTGCCCTTCTTATTGGTCCAATATGCAAACAGTAGCTGACGTTGAAGTTCTGATTTTCCATCTTCGAGCTAAGAAGTTCTCGTTCCCAATATTCATGGATAAAATGAGTAAACTGAAAGTTCTCATAGTAACAAATTATGGCTTCTATCCTTCTCAGCTCAACAATCTCAAACTTCTTGATTCCTTACCAAACCTGAAAAGAATAAGACTAGAGCGAATTTCTGTCCCATCTTTCGGCACATTGAAGAATCTAAGGAAACTATCCCTCTACATGTGTGATACAAGTTCTGCTTTCGAATCTCATGATGATAACTTTCAATTTTCAGAAGCATTTCCAAATCTTGTAGAGTTGAGTATTGATTACAGCAAAGACATGGTTGGATTGCCTGACGGAATCTGCAAGATTCCGTCGCTGAAGAAGCTCTTTGTCACTAACTGCCACAAGCTCTCTGCATTGCCCAAAGAAATTGGAAATCTTAGGAGTTTGGAAATCTTGAGGCTCAATTCTTGCACTGATTTGCAAGGATTACCAGGCTTCATTGGAAGGCTTACGAATCTTCGAGTTCTCGACATATCCAACTGCATAAGCCTTCCAAATTTACCTGAAGAAATTGGGAATCTTTCTAGTTTAAGGAATCTATACATGACAAGTTGTGCCAACTGTGAATTGCCATCTTTAGTGGCAAATCTTGAGAATTTGAAGGTGACATGTGATGAAGAAACAGCTACTTTATGGGAAGCTTTCATACCATTGATTCCTCATCTAAAGATAGAGGTGCCTCAAGTTGATGTCAACTTAAATTGGCTAATGTAA 2511 0.3986 MAHPTQIAILASLLHRASDNILQMLQTTRMNRNRNRGVLDLTSIILTELTPLYNEIKNYNYNDDLLDRQNDQIKALIRKHDEASLCDCSSWWHLWDNCFSWLVPHIKNNYNDDDDYFDEALREELNETLEKLREIIELLNYGGCGGVFERRGPCCVPEKRGFTVGLDESMRKLKAEVMREGVCVIVLTGLAGSGKTTLATSLCWDQQVKGKFKENILFITFSKAPKLKIIVERLFEQCGYRVPLFQSEEDAINRMGVLLRNIGKTGPVLLVLDDVWPGSESLVHKFKIQSSSDYKILVTSRVLFPRFGNPFIVLEPLNHQDSLTLFSHFAQLEDNYSNIQNEDILQRVVRGCKGSPLAITVIGRSISNQPYEFWLKMVQKLSQGRSIFDSNDELLKCLENILEILKDKPVMKECFMDLGLFMEDQRIPVTVLFDMWSELYGMDDDGIEAMTIINTLCSMNLANVSVARKNACDVENYYYNNHFIVMHDLLRELAIYQNNQEAIEHRHRMSIGMNMMNEHNGELWLAEKQQDMIAEIVSKCLRWCVNNQQVPQQIHARTLSISIDETCPSYWSNMQTVADVEVLIFHLRAKKFSFPIFMDKMSKLKVLIVTNYGFYPSQLNNLKLLDSLPNLKRIRLERISVPSFGTLKNLRKLSLYMCDTSSAFESHDDNFQFSEAFPNLVELSIDYSKDMVGLPDGICKIPSLKKLFVTNCHKLSALPKEIGNLRSLEILRLNSCTDLQGLPGFIGRLTNLRVLDISNCISLPNLPEEIGNLSSLRNLYMTSCANCELPSLVANLENLKVTCDEETATLWEAFIPLIPHLKIEVPQVDVNLNWLM 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181828g00001 836 SUPERFAMILY RNI-like 595 800 - -
Stsc181828g00001 836 Gene3D - 399 498 IPR036388 -
Stsc181828g00001 836 Gene3D - 316 398 IPR042197 -
Stsc181828g00001 836 PRINTS Disease resistance protein signature 352 366 - -
Stsc181828g00001 836 PRINTS Disease resistance protein signature 262 276 - -
Stsc181828g00001 836 PRINTS Disease resistance protein signature 747 763 - -
Stsc181828g00001 836 PRINTS Disease resistance protein signature 184 199 - -
Stsc181828g00001 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 418 IPR027417 -
Stsc181828g00001 836 Gene3D - 152 304 IPR027417 -
Stsc181828g00001 836 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 46 835 IPR039203 GO:0050832
Stsc181828g00001 836 Pfam NB-ARC domain 168 403 IPR002182 GO:0043531
Stsc181828g00001 836 Coils Coil 486 506 - -
Stsc181828g00001 836 Coils Coil 118 142 - -
Stsc181828g00001 836 Gene3D Ribonuclease Inhibitor 587 810 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181828g00001 Stsc-Chr181828 22493 27626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181828g00001 189 790 WRKY Transcription Factor Family AT5G45050 22.222 2.20e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181828g00001 - - gmx:100809435 881.322