Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181827g00005 ATGGTTTGGTTTCAATGCGAAGACTGTGGCGACAACCTCAAGAAGCCCAAGTTGGCTGGTCACCTCCGAACCTGCTCCGCTTACAGGTTATCATGCATTGACTGTGGAGAAACTTTTGGCCAAGACACCGTTCAGAACCACACTCAGTGTATGACCGAAGCGGAAAAGTATGGTCCAAAGGGGCAAGTCAAGAATGGTACACCTGCAAAACCTAACAAGGATGGCAACAAGCAAAAGCCTGAAGTTGATATCAATGTCGGTTTGTCCGAACGCCCCCCATGGTTTTGTAGCCTTTGCAATACACAAGCTACAAGCAAGCAAACTCTTCTTCTCCATGCCGATGGGAAGAAACATCGGGCAAAAGCCCGAGCATACCATGCTTCAAAGCAGCCACCAGCCCAGACAGACAAAGCTGCACCTGATGCAAAGATTGTGTCGGAGACTGCTTCTAATGACGCTAGAGACAGCAAAAATGACAAGCAACCAAAATTAGAAGAGTCTTCTAAACAAAATGATTTGAAGTCAGGGGATGAAATTTCTTTGGCCAAAAAGAGGAAACTTGAAGCGTTGGAGGGTGATCTTATAAAAAAATGCAGGAATGACACTTCTGTTGACACTGGAAATGGGGAAGTAATTCAGGGCGAAGGAGCAGAAGGGAAAGTGGAATCTGCTGTAAAAAATAAAATTAAGTGGAAGAAGTTTATCAAATCAGCCCTGAAATCTGTATGTGTTTTTAACATTGAAATGACATACTTCCCTGCTTTGTGCTTAATTTACCTGTGTTATACTGATCCTATTTGTTTATTTTGGGCATGA 816 0.4338 MVWFQCEDCGDNLKKPKLAGHLRTCSAYRLSCIDCGETFGQDTVQNHTQCMTEAEKYGPKGQVKNGTPAKPNKDGNKQKPEVDINVGLSERPPWFCSLCNTQATSKQTLLLHADGKKHRAKARAYHASKQPPAQTDKAAPDAKIVSETASNDARDSKNDKQPKLEESSKQNDLKSGDEISLAKKRKLEALEGDLIKKCRNDTSVDTGNGEVIQGEGAEGKVESAVKNKIKWKKFIKSALKSVCVFNIEMTYFPALCLIYLCYTDPICLFWA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181827g00005 271 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Stsc181827g00005 271 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 241 IPR039999 GO:0003677
Stsc181827g00005 271 MobiDBLite consensus disorder prediction 58 80 - -
Stsc181827g00005 271 SMART ZnF_U1_5 91 125 IPR003604 GO:0003676|GO:0008270
Stsc181827g00005 271 SUPERFAMILY beta-beta-alpha zinc fingers 80 127 IPR036236 -
Stsc181827g00005 271 MobiDBLite consensus disorder prediction 148 176 - -
Stsc181827g00005 271 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Stsc181827g00005 271 Pfam Zinc-finger of C2H2 type 94 118 - -
Stsc181827g00005 271 MobiDBLite consensus disorder prediction 114 176 - -
Stsc181827g00005 271 FunFam UBP1-associated proteins 1C 88 131 - -
Stsc181827g00005 271 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Stsc181827g00005 271 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Stsc181827g00005 271 Gene3D - 1 50 - -
Stsc181827g00005 271 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Stsc181827g00005 271 Gene3D Classic Zinc Finger 88 130 - -
Stsc181827g00005 271 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181827g00005 Stsc-Chr181827 28347 30766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181827g00005 73 222 C2H2 Transcription Factor Family AT2G19380 40.000 3.02e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181827g00005 K15263 - gmx:100790703 359.762