Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181827g00004 ATGTTTCTTGACAAAAACAAGGATTATGTGGTCGCAGAACATCAGGATCTGTTGACAGCCTCAAAATGTATATTTGTGGCTGGTCTATTTCCCCCTTCCCCACAGGAGTCTTCAAAATCATCAAAATTCTCTTCAATTGGATCTCGCTTCAAGTTACAACTTCAATCTTTGATGGAGACGTTAAATTCAACAGAACCTCATTATATCAGATGTGTCAAGCCAAACAATGTTCTCAAGCCTGCTATTTTTGAAAATCTCAATATTATCCAACAATTGCGCTGTGGTGGTGTTCTTGAGGCAATTAGAATCAGCTGTGCTGGATATCCTACAAGACGGACTTTTTATGAGTTTCTTAACCGATTTGGTGTTCTTGCCCCTGAAGTTCTGGATGGAAATTATGATGACAAGGTTGCTTGCCAAACGATACTGGATAAGATGGGTATGAAAGGCTATCAGATAGGCAAAACAAAGGTTTTCCTAAGAGCCGGTCAAATGGCTGAGTTGGATGCAAGAAGAGCAGAGGTTCTTGGGAATGCAGCTAGAGTCATTCAGAGGCAAATACGTACACATATTGCACGCAAGGAATTCAGAGAGTTGCGTCAAGCTGCAGTCTGTTTTCAATCTAACTTACGAGGAATATTGGCCCGGAAGCTCTATGAGAAGTTGCGGCGTGAAGCAGCAGCTCTGAAAATAGAAAAGAACTTCAAAGGATATGTTGCTAGGAGATCTTTCTTAAGTATACGATCATCTGCAATTATAATACAGACAGGTTTAAGGGCTATGAAGGCTCGTGATGAATTTAGATTTAGAAAGCAAACAAAGGCTGCAATTCATATCCAGGCTAATTTGCGACGGCAAATTGCATTTTCATATTATAGAAAGTTGCAAAAGGCTGCAATTGTTACTCAGTGTGGCTGGAGGAGAAGGGTTGCTAGAAGGGAACTTAGAATGCTCAAAATGGCTGCAAGAGAAACAGGGGCCCTTAAGGAAGCAAAGGACAAACTAGAGAAGCGTGTAGAAGAACTTACATGGCGTTTGCAAATTGAGAAGCGTTTGAGGACTGATCTGGAAGAGGAAAAGGCACAAGAAGTTGCCAAGTTACAGGATGCTTTGCATGCAATGCAAATAAAGTTAGATGAAGCAAATGCTAGAGCAGTTAAAGAGCGTGAGGCAGCACGGAAAGCCATTGAAGAAGCACCACCAGTTATTAAGGAGACTCCTGTTCTAATTCAAGACACTGAAAAGATTAATTCTTTAACATCCGAAGTAAATAGTTTGAAGGAATCGCTATTATTGGAAATACGAGCTAAGGAAGAAGCCAGGAAAGCTCAGACTGAGGCTGAAGCCAGAAATGAGGAGCTAGTTAAAAAGGTTGAAGATTCTGACCGTAAAGTGGAACAACTTCAGGAATTGGTTCAGAGATTGGAGGAAAAAATTTCCAATTCAGAGTCAGAAAACCAAGTTCTTCGCCAGCAAGCATTGGCTGTATCACCGACCGGAAAAGCTTTGACTGCAAGACCAAGGACAATGATAATTCAGAGGATACCAGAAAATGGGAATACTCCAAATGGGGATGCAAAAATTGGATCAGATATGGTTCTTGCTGTATCAAATGTACGTGAGCCTGAATCTGAGGGAAAACCGCAAAAATCTCTCAATGAGAAGCAGCAGGAAAATCAGGATTTACTAATCAAGTGCATATCAAAAGATTTGGGATTTTCTGGGGGCAAACCTGTTGCTGCATGTGTTATATACAAATGCCTTCTGCACTGGAGGTCATTTGAAGTTGAAAGAACAAGTGTCTTTGACCGCATCATTCAAACAATAGCTTCAGCAGTTGAGGTCCAGGACAATACTGATGTATTAGCATATTGGTTGTCTAATACATCCACGTTGTTGTTGCTACTCCAACGCACTCTCAAAGCAAGTGGAGCAGCTAGCTTAACGCCACAACGGCGGAGAACGGCATCATCATCTCTGTTTGGAAGAATGTCTCAAGGGCTAAGGGCATCTCCCCAAACTGCTGGGTTGCCATTTCTAAATGGGCGGGGTCTGAGTAGACTGGATGATTTACGGCAAGTGGAAGCAAAATATCCTGCACTGTTATTTAAGCAGCAGCTTACTGCTTTCCTGGAAAAAATATATGGAATGATAAGAGACAACCTTAAAAAGGAGATCTCTCCATTACTCGGACTTTGTATACAGGCCCCAAGGACCTCGCGTCAAAGTTTAGTGAAAGGACGTTCACAAGCCAATGCAGTTGCTCAGCAAGCTTTAATAGCTCACTGGCAAAGTATTGTGAAGAGCTTAAACAATTCTCTAAACATAATGAAGGCCAACTATGTCCCTCCCTTCTTGGTCCGCAAAGTTTTCACTCAAATATTTTCATTCATCAATGTTCAACTATTCAACAGTCTATTATTGCGTCGGGAGTGTTGTTCATTCAGCAACGGGGAATATGTAAAGACAGGCTTGGCTGAATTAGAGCTGTGGTGTGTGGATGCTACCGAAGAGTATACTGGCTCGGCTTGGGAGGAACTGAAACATATCAGGCAGGCTGTTGGATTCTTGGTGATACATCAAAAACCCAGAAAGTCCTTGAATGAAATAACGAAGGAGCTTTGCCCTGTGGGTGCTTTCTTTCTTTGTATTAACTATTGA 2661 0.4175 MFLDKNKDYVVAEHQDLLTASKCIFVAGLFPPSPQESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENLNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDKVACQTILDKMGMKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARVIQRQIRTHIARKEFRELRQAAVCFQSNLRGILARKLYEKLRREAAALKIEKNFKGYVARRSFLSIRSSAIIIQTGLRAMKARDEFRFRKQTKAAIHIQANLRRQIAFSYYRKLQKAAIVTQCGWRRRVARRELRMLKMAARETGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKAQEVAKLQDALHAMQIKLDEANARAVKEREAARKAIEEAPPVIKETPVLIQDTEKINSLTSEVNSLKESLLLEIRAKEEARKAQTEAEARNEELVKKVEDSDRKVEQLQELVQRLEEKISNSESENQVLRQQALAVSPTGKALTARPRTMIIQRIPENGNTPNGDAKIGSDMVLAVSNVREPESEGKPQKSLNEKQQENQDLLIKCISKDLGFSGGKPVAACVIYKCLLHWRSFEVERTSVFDRIIQTIASAVEVQDNTDVLAYWLSNTSTLLLLLQRTLKASGAASLTPQRRRTASSSLFGRMSQGLRASPQTAGLPFLNGRGLSRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRQSLVKGRSQANAVAQQALIAHWQSIVKSLNNSLNIMKANYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELELWCVDATEEYTGSAWEELKHIRQAVGFLVIHQKPRKSLNEITKELCPVGAFFLCINY 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181827g00004 886 Gene3D - 176 226 - -
Stsc181827g00004 886 Gene3D - 274 323 - -
Stsc181827g00004 886 Gene3D - 227 273 - -
Stsc181827g00004 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 226 IPR027417 -
Stsc181827g00004 886 ProSiteProfiles IQ motif profile. 178 202 IPR000048 GO:0005515
Stsc181827g00004 886 FunFam unconventional myosin-Va 178 226 - -
Stsc181827g00004 886 Gene3D Myosin VI head, motor domain, U50 subdomain 9 42 - -
Stsc181827g00004 886 Gene3D Kinesin motor domain 65 103 IPR036961 -
Stsc181827g00004 886 SMART MYSc_2a 1 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00004 886 FunFam unconventional myosin-Va 275 322 - -
Stsc181827g00004 886 ProSiteProfiles IQ motif profile. 272 298 IPR000048 GO:0005515
Stsc181827g00004 886 ProSiteProfiles Dilute domain profile. 603 886 IPR002710 -
Stsc181827g00004 886 ProSiteProfiles IQ motif profile. 295 324 IPR000048 GO:0005515
Stsc181827g00004 886 SMART iq_5 198 220 IPR000048 GO:0005515
Stsc181827g00004 886 SMART iq_5 223 245 IPR000048 GO:0005515
Stsc181827g00004 886 SMART iq_5 271 293 IPR000048 GO:0005515
Stsc181827g00004 886 SMART iq_5 175 197 IPR000048 GO:0005515
Stsc181827g00004 886 SMART iq_5 246 268 IPR000048 GO:0005515
Stsc181827g00004 886 SMART iq_5 294 316 IPR000048 GO:0005515
Stsc181827g00004 886 SMART DIL_2 789 881 IPR002710 -
Stsc181827g00004 886 FunFam Myosin XI D 108 171 - -
Stsc181827g00004 886 ProSiteProfiles Myosin motor domain profile. 1 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00004 886 Pfam DIL domain 790 876 IPR002710 -
Stsc181827g00004 886 Pfam IQ calmodulin-binding motif 200 219 IPR000048 GO:0005515
Stsc181827g00004 886 Pfam IQ calmodulin-binding motif 297 316 IPR000048 GO:0005515
Stsc181827g00004 886 Pfam IQ calmodulin-binding motif 248 268 IPR000048 GO:0005515
Stsc181827g00004 886 Pfam IQ calmodulin-binding motif 178 197 IPR000048 GO:0005515
Stsc181827g00004 886 Pfam Myosin head (motor domain) 2 161 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00004 886 ProSiteProfiles IQ motif profile. 224 250 IPR000048 GO:0005515
Stsc181827g00004 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 324 IPR027417 -
Stsc181827g00004 886 Coils Coil 433 492 - -
Stsc181827g00004 886 ProSiteProfiles IQ motif profile. 199 228 IPR000048 GO:0005515
Stsc181827g00004 886 PANTHER MYOSIN 1 875 - -
Stsc181827g00004 886 Gene3D - 2 64 - -
Stsc181827g00004 886 CDD MyosinXI_CBD 554 877 IPR037975 GO:0007015
Stsc181827g00004 886 ProSiteProfiles IQ motif profile. 247 276 IPR000048 GO:0005515
Stsc181827g00004 886 FunFam unconventional myosin-Va 227 274 - -
Stsc181827g00004 886 Coils Coil 318 398 - -
Stsc181827g00004 886 Gene3D - 108 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181827g00004 Stsc-Chr181827 8018 16274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181827g00004 1 877 Myosins gene family AT5G20490 78.107 0.0 1383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181827g00004 K10357 - gmx:100777802 1518.83