Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181827g00003 ATGTTGCAGTCTGCAGCAGTGAACATTATTGTTGGTTCTCATGTCTGGATTGAAGATCCAGTGCAAGCATGGATTGCTGGAGAAGTTTCTAAAATCAATGGAGAAGAGGTTCATGTGCGCACTGCAGAGGGGAAAACAGTTGTAAAAAATATCTCAAAGGTTTTTCCCAAGGATAATGAAGCACCTCCCGGGGGTGTAGATGATATGACCAAACTGTCATACTTGCATGAACCAGGAGTTCTGCACAACTTGGCGACTAGATATGAACTCAATGAAATTTATACATATACTGGAAATATTCTGATTGCAATAAACCCATTCCAAAGGTTGCCTCATCTATATGATACTCATATGATGGAACAATACAAAGGAGCTGTATTTGGTGAGCTGAGTCCCCATGTTTTCGCTGTTGCTGATGTTGCATACAGGGCAATGATCAATGAAGGGAAAAGCAACTCAATCCTGGTTAGTGGAGAGAGTGGGGCTGGTAAGACAGAGACAACAAAGATGCTCATGCGATATCTTGCATACCTTGGAGGCCGATCTGGGGTAGAAGGGCGAACAGTTGAACAACAAGTTCTAGAATCCAATCCAGTTCTTGAAGCATTTGGGAATGCCAAGACAGTTAGAAACAATAATTCAAGTCGTTTTGGTAAATTTGTTGAGATACAATTTGACAACAAGGGAAGGATATCTGGAGCTGCTATACGGACTTATTTGCTTGAGCGGTCACGAGTATGTCAAATTTCAGATCCGGAAAGAAACTACCATTGTTTTTACCTTCTTTGTGCAGCACCAGCTGAGGAGGCAATATTTAGGGTTGTCGCAGCAGTCTTGCACCTTGGGAATATTGAATTTGCAAAAGGAGAGGAGATCGACTCTTCTGTTATCAAGGATGAGAAATCTAGGTTCCATCTTAATACGACTGCGGAACTTCTCAAGTGTGATGCTAAGAGCTTGGAAGATGCACTGATCAAGCGTGTGATGGTAACACCTGAGGAGGTCATTACAAGAACCCTTGATCCTGTTGCAGCTGTTGGTAGCAGGGATGCATTAGCCAAAACTATTTACTCACGCTTGTTTGATTGGCTTGTGGAGAAGATTAACCGTTCAATTGGGCAAGATCCAAATTCTAAATCTATCATTGGAGTTCTTGATATCTATGGGTTTGAAAGTTTTAAATTCAATAGTTTTGAGCAGTTCTGTATTAATTTTACGAATGAGAAGTTGCAACAACACTTTAATCAGCATGTCTTCAAAATGGAGCAAGAAGAATACACCAAGGAAGAGATTGATTGGAGTTACATAGAATTTGTTGACAACCAAGATGTTCTGGATTTAATTGAAAAGAAACCTGGAGGAATAATTGCACTTCTTGATGAAGCCTGTATGTTTCCTAAGTCTACACATGAAACATTTTCTCAGAAGCTGTATCAGACATTCAAAAACAACAAGCGGTTTATCAAACCTAAACTTTCTCGGACTAGTTTTACCATATCTCACTATGCAGGGGAGGTGACATATCTGGCTGATATGTTTCTTGACAAAAACAAGGATTATGTGGTCGCAGAACATCAGGATCTGTTGACAGCCTCAAAATGTATATTTGTGGCTGGTCTATTTCCCCCTTCCCCACAGGAGTCTTCAAAATCATCAAAATTCTCTTCAATTGGATCTCGCTTCAAGTTACAACTTCAATCTTTGATGGAGACGTTAAATTCAACAGAACCTCATTATATCAGATGTGTCAAGCCAAACAATGTTCTCAAGCCTGCTATTTTTGAAAATCTCAATATTATCCAACAATTGCGCTGTGGTGGTGTTCTTGAGGCAATTAGAATCAGCTGTGCTGGATATCCTACAAGACGGACTTTTTATGAGTTTCTTAACCGATTTGGTGTTCTTGCCCCTGAAGTTCTGGATGGAAATTATGATGACAAGGTTGCTTGCCAAACGATACTGGATAAGATGGGTATGAAAGGCTATCAGATAGGCAAAACAAAGGTTTTCCTAAGAGCCGGTCAAATGGCTGAGTTGGATGCAAGAAGAGCAGAGGTTCTTGGGAATGCAGCTAGAGTCATTCAGAGGCAAATACGTACACATATTGCACGCAAGGAATTCAGAGAGTTGCGTCAAGCTGCAGTCTGTTTTCAATCTAACTTACGAGGAATATTGGCCCGGAAGCTCTATGAGAAGTTGCGGCGTGAAGCAGCAGCTCTGAAAATAGAAAAGAACTTCAAAGGATATGTTGCTAGGAGATCTTTCTTAAGTATACGATCATCTGCAATTATAATACAGACAGGTTTAAGGGCTATGAAGGCTCGTGATGAATTTAGATTTAGAAAGCAAACAAAGGCTGCAATTCATATCCAGGCTAATTTGCGACGGCAAATTGCATTTTCATATTATAGAAAGTTGCAAAAGGCTGCAATTGTTACTCAGTGTGGCTGGAGGAGAAGGGTTGCTAGAAGGGAACTTAGAATGCTCAAAATGGCTGCAAGAGAAACAGGGGCCCTTAAGGAAGCAAAGGACAAACTAGAGAAGCGTGTAGAAGAACTTACATGGCGTTTGCAAATTGAGAAGCGTTTGAGGACTGATCTGGAAGAGGAAAAGGCACAAGAAGTTGCCAAGTTACAGGATGCTTTGCATGCAATGCAAATAAAGTTAGATGAAGCAAATGCTAGAGCAGTTAAAGAGCGTGAGGCAGCACGGAAAGCCATTGAAGAAGCACCACCAGTTATTAAGGAGACTCCTGTTCTAATTCAAGACACTGAAAAGATTAATTCTTTAACATCCGAAGTAAATAGTTTGAAGGAATCGCTATTATTGGAAATACGAGCTAAGGAAGAAGCCAGGAAAGCTCAGACTGAGGCTGAAGCCAGAAATGAGGAGCTAGTTAAAAAGGTTGAAGATTCTGACCGTAAAGTGGAACAACTTCAGGAATTGGTTCAGAGATTGGAGGAAAAAATTTCCAATTCAGAGTCAGAAAACCAAGTTCTTCGCCAGCAAGCATTGGCTGTATCACCGACCGGAAAAGCTTTGACTGCAAGACCAAGGACAATGATAATTCAGAGGATACCAGAAAATGGGAATACTCCAAATGGGGATGCAAAAATTGGATCAGATATGGTTCTTGCTGTATCAAATGTACGTGAGCCTGAATCTGAGGGAAAACCGCAAAAATCTCTCAATGAGAAGCAGCAGGAAAATCAGGATTTACTAATCAAGTGCATATCAAAAGATTTGGGATTTTCTGGGGGCAAACCTGTTGCTGCATGTGTTATATACAAATGCCTTCTGCACTGGAGGTCATTTGAAGTTGAAAGAACAAGTGTCTTTGACCGCATCATTCAAACAATAGCTTCAGCAGTTGAGGTCCAGGACAATACTGATGTATTAGCATATTGGTTGTCTAATACATCCACGTTGTTGTTGCTACTCCAACGCACTCTCAAAGCAAGTGGAGCAGCTAGCTTAACGCCACAACGGCGGAGAACGGCATCATCATCTCTGTTTGGAAGAATGTCTCAAGGGCTAAGGGCATCTCCCCAAACTGCTGGGTTGCCATTTCTAAATGGGCGGGGTCTGAGTAGACTGGATGATTTACGGCAAGTGGAAGCAAAATATCCTGCACTGTTATTTAAGCAGCAGCTTACTGCTTTCCTGGAAAAAATATATGGAATGATAAGAGACAACCTTAAAAAGGAGATCTCTCCATTACTCGGACTTTGTATACAGGCCCCAAGGACCTCGCGTCAAAGTTTAGTGAAAGGACGTTCACAAGCCAATGCAGTTGCTCAGCAAGCTTTAATAGCTCACTGGCAAAGTATTGTGAAGAGCTTAAACAATTCTCTAAACATAATGAAGGCCAACTATGTCCCTCCCTTCTTGGTCCGCAAAGTTTTCACTCAAATATTTTCATTCATCAATGTTCAACTATTCAACAGTCTATTATTGCGTCGGGAGTGTTGTTCATTCAGCAACGGGGAATATGTAAAGACAGGCTTGGCTGAATTAGAGCTGTGGTGTGTGGATGCTACCGAAGAGTATACTGGCTCGGCTTGGGAGGAACTGAAACATATCAGGCAGGCTGTTGGATTCTTGGTGATACATCAAAAACCCAGAAAGTCCTTGAATGAAATAACGAAGGAGCTTTGCCCTGTTCTCAGTATACAACAGTTATACAGGATAAGTACCATGTATTGGGATGACAAGTACGGCACGCATAGTGTATCTTCGGACGTCATAACAAGCATGAGAGCTATGATGTCCGAGGACTCTAATAACGCTGTCAGCACTTCTTTCCTATTAGATGATGACTCGAGCATCCCATTCTCGGTGGATGACATATCCAAATCTATGGAACCAGTAGAAGTAGCTGACATAGACCCTCCTCCGTTGATACGAGAGAACTCAGGCTTTGGGTTCTTATTATCACGCTCCGAGTGA 4449 0.4151 MLQSAAVNIIVGSHVWIEDPVQAWIAGEVSKINGEEVHVRTAEGKTVVKNISKVFPKDNEAPPGGVDDMTKLSYLHEPGVLHNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAVFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPAEEAIFRVVAAVLHLGNIEFAKGEEIDSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIKRVMVTPEEVITRTLDPVAAVGSRDALAKTIYSRLFDWLVEKINRSIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADMFLDKNKDYVVAEHQDLLTASKCIFVAGLFPPSPQESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENLNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDKVACQTILDKMGMKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARVIQRQIRTHIARKEFRELRQAAVCFQSNLRGILARKLYEKLRREAAALKIEKNFKGYVARRSFLSIRSSAIIIQTGLRAMKARDEFRFRKQTKAAIHIQANLRRQIAFSYYRKLQKAAIVTQCGWRRRVARRELRMLKMAARETGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKAQEVAKLQDALHAMQIKLDEANARAVKEREAARKAIEEAPPVIKETPVLIQDTEKINSLTSEVNSLKESLLLEIRAKEEARKAQTEAEARNEELVKKVEDSDRKVEQLQELVQRLEEKISNSESENQVLRQQALAVSPTGKALTARPRTMIIQRIPENGNTPNGDAKIGSDMVLAVSNVREPESEGKPQKSLNEKQQENQDLLIKCISKDLGFSGGKPVAACVIYKCLLHWRSFEVERTSVFDRIIQTIASAVEVQDNTDVLAYWLSNTSTLLLLLQRTLKASGAASLTPQRRRTASSSLFGRMSQGLRASPQTAGLPFLNGRGLSRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRQSLVKGRSQANAVAQQALIAHWQSIVKSLNNSLNIMKANYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELELWCVDATEEYTGSAWEELKHIRQAVGFLVIHQKPRKSLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSDVITSMRAMMSEDSNNAVSTSFLLDDDSSIPFSVDDISKSMEPVEVADIDPPPLIRENSGFGFLLSRSE 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181827g00003 1482 Pfam Myosin head (motor domain) 268 672 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00003 1482 Pfam Myosin head (motor domain) 66 267 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00003 1482 CDD MyosinXI_CBD 1065 1448 IPR037975 GO:0007015
Stsc181827g00003 1482 Pfam DIL domain 1301 1404 IPR002710 -
Stsc181827g00003 1482 Gene3D - 391 575 - -
Stsc181827g00003 1482 ProSiteProfiles Myosin motor domain profile. 64 684 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00003 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 737 835 IPR027417 -
Stsc181827g00003 1482 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Stsc181827g00003 1482 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Stsc181827g00003 1482 Gene3D - 619 685 - -
Stsc181827g00003 1482 FunFam Myosin XI D 619 682 - -
Stsc181827g00003 1482 Gene3D Kinesin motor domain 65 253 IPR036961 -
Stsc181827g00003 1482 ProSiteProfiles IQ motif profile. 710 739 IPR000048 GO:0005515
Stsc181827g00003 1482 Gene3D Myosin VI head, motor domain, U50 subdomain 268 553 - -
Stsc181827g00003 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 737 IPR027417 -
Stsc181827g00003 1482 Gene3D - 737 784 - -
Stsc181827g00003 1482 Gene3D - 687 736 - -
Stsc181827g00003 1482 Gene3D - 785 834 - -
Stsc181827g00003 1482 FunFam unconventional myosin-Va 689 737 - -
Stsc181827g00003 1482 Pfam IQ calmodulin-binding motif 759 779 IPR000048 GO:0005515
Stsc181827g00003 1482 Pfam IQ calmodulin-binding motif 689 708 IPR000048 GO:0005515
Stsc181827g00003 1482 Pfam IQ calmodulin-binding motif 808 827 IPR000048 GO:0005515
Stsc181827g00003 1482 Pfam IQ calmodulin-binding motif 711 730 IPR000048 GO:0005515
Stsc181827g00003 1482 ProSiteProfiles Dilute domain profile. 1114 1425 IPR002710 -
Stsc181827g00003 1482 FunFam unconventional myosin-Va 785 833 - -
Stsc181827g00003 1482 Gene3D - 13 57 IPR008989 GO:0003774|GO:0005524|GO:0051015
Stsc181827g00003 1482 Coils Coil 829 909 - -
Stsc181827g00003 1482 CDD MYSc_Myo11 78 672 IPR036018 -
Stsc181827g00003 1482 SMART MYSc_2a 58 685 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00003 1482 Gene3D Kinesin motor domain 375 614 IPR036961 -
Stsc181827g00003 1482 PANTHER MYOSIN 268 1413 - -
Stsc181827g00003 1482 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00003 1482 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00003 1482 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00003 1482 FunFam Class V myosin 391 532 - -
Stsc181827g00003 1482 ProSiteProfiles IQ motif profile. 783 809 IPR000048 GO:0005515
Stsc181827g00003 1482 Pfam Myosin N-terminal SH3-like domain 11 48 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc181827g00003 1482 SMART DIL_2 1300 1407 IPR002710 -
Stsc181827g00003 1482 Coils Coil 944 1003 - -
Stsc181827g00003 1482 ProSiteProfiles IQ motif profile. 735 761 IPR000048 GO:0005515
Stsc181827g00003 1482 FunFam Myosin 2 265 379 - -
Stsc181827g00003 1482 Gene3D - 254 267 - -
Stsc181827g00003 1482 ProSiteProfiles IQ motif profile. 689 713 IPR000048 GO:0005515
Stsc181827g00003 1482 SMART iq_5 686 708 IPR000048 GO:0005515
Stsc181827g00003 1482 SMART iq_5 782 804 IPR000048 GO:0005515
Stsc181827g00003 1482 SMART iq_5 805 827 IPR000048 GO:0005515
Stsc181827g00003 1482 SMART iq_5 757 779 IPR000048 GO:0005515
Stsc181827g00003 1482 SMART iq_5 709 731 IPR000048 GO:0005515
Stsc181827g00003 1482 SMART iq_5 734 756 IPR000048 GO:0005515
Stsc181827g00003 1482 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 10 59 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181827g00003 Stsc-Chr181827 8018 20149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181827g00003 69 1482 Myosins gene family AT5G20490 79.713 0.0 2399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181827g00003 K10357 - gmx:100777802 2664.8