Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181822g00007 ATGGCAACTGCAAGGACCGTCAAGGACGTTTCTCCCCATGAATTCGTCAAGGCTTATGCTGCCCATCTCAAGCGTTCTGGAAAGATGGAGTTGCCTGAGTGGACAGACATTGTGAAAACTGCAAAGTTTAAGGAATTGGCCCCTTATGATCCTGACTGGTATTATATTAGAGCTGCATCCATGGCAAGGAAGGTTTATTTGAGGGGTGGCCTTGGTGTTGGTGCTTTTAGGAGGATCTATGGTGGAAGCAAGAGAAATGGAAGCTGTCCCCCGCATTTCTGCAAGAGTAGCGGCGGCATTGCCAGACACATTCTGCAACAGTTGCAAACCATGAACATTATTGAGCACGATTCAAAGGGGGGAAGAAAAATCACTTCTAGCGGACGAAGGGATCTTGATCAAGTTGCTGGTCGCATTGTGATTGCTCCTTGA 432 0.4745 MATARTVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSCPPHFCKSSGGIARHILQQLQTMNIIEHDSKGGRKITSSGRRDLDQVAGRIVIAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181822g00007 143 PANTHER 40S RIBOSOMAL PROTEIN S19 2 138 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc181822g00007 143 FunFam 40S ribosomal protein S19 2 142 - -
Stsc181822g00007 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc181822g00007 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
Stsc181822g00007 143 Gene3D - 1 142 IPR036388 -
Stsc181822g00007 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Stsc181822g00007 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181822g00007 Stsc-Chr181822 27724 29433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181822g00007 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 89.437 2.56e-94 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181822g00007 K02966 - gmx:100499800 274.248