Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181822g00005 ATGGATTATTCTTCTTCGTTATCTTCTCTGAGCTTCCATTTCAATAGCTTCAGAGCTTCAGCGAACTCGTTCCTCTCGCAATACGAACCTCTTCTTCTGCTTCTAGCTCCTCTCTTCTCTCTCTTCCTCGCGCACTCTCTTCGCTCATTCTTCAATCACATCCATGAAAAAGGCCTCAAAGCCTCGCTCCTAGGGTTCCTCATGAGCTCTGTCAAATTGCTCCCTGGAGTGCAGAGTTACATTGATAGAGAAAAACAGAAGGTTGTGGATAAAATGCAGTCTGATGGTAAATCTAAAAGAGAAGGTTGGAAAACAGAGTTGCCAAGCACAGGACTAGGCACATTAGTACTTGAGAAAATGAGAGAGGAGAAAAGAAAAGATGTGGCTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGTGGAAGTGAAATTGATGGACATTTTTCTCTGATAAATGAAGCATGCTCAATGTTTGCACATACCAATCCCTTGCATCTGGATGTATTCAAGAGTGTTGCACGCTTTGAGGCAGAAGTGGTTGCAATGACTGCAGCACTTCTTGGAAGTAAGGAAAAGAGTTCTGGAGGACAAGTATGTGGCAATATGACATCAGGAGGAACTGAAAGTATATTATTAGCAGTCAAATCATCTCGTGATTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATAATTCCTGTGTCTGCACACTCAGCATATGACAAGGCTGCACAGTATTTCAATATCAAACTATGGCGTGTTCCAGTTGACAAAGACTTCAAAGCGGATGTAAAAGCGATTCGACGTCATATTAACAAAAATACCATATTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATTGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATCTGTCTCCATGTGGACCTCTGCCTGGGTGGCTTTGTATTGCCTTTTGCTCGTGAGCTTGGGTACCCTATACCACCTTTTGATTTTTCTGTTAAAGGAGTATCTTCAATATCAGTGGACGTGCATAAATATGGTTTAGCTCCCAAAGGAACAAGTATAGTCCTGTACAGGAACCATGAAATCAGAAAGCATCAATTTGTTGCTGTTACTGAGTGGACTGGTGGGTTGTATGTATCTCCAACCATAGCTGGAAGCAGGCCTGGAGGTCTAATTGCAGGGGCCTGGGCAGCAATGATATCTCTAGGGAAAGAAGGTTACTTGAAAAACACAAAAACAATTATGGAAGCAACAAAAAGACTACAGAAAGGCATAGAAGAAATTCCTGAGTTGTATATCGTTGGAAGACCCGACATGACTATCGTGGCTTTTGGATCTAATGTCCTGGACATATTTGAAGTCAATGATATGATGTCTTCCAAAGGGTGGCATTTGAATGCTTTGCAGAGACCCAACAGCATCCATATCTGCGTGACACTGCAGCATGAGCCAATTGTTGAAGACTTCCTCGCTGATTTGAAGGAATCCGTGAATACTGTGAAGGAAAATCCTGGTCCTATAAGTGGAGGCCTAGCACCTATATATGGTGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAGTTGCTGGTGGATTATATGGACGGTACCTGCTAG 1638 0.4286 MDYSSSLSSLSFHFNSFRASANSFLSQYEPLLLLLAPLFSLFLAHSLRSFFNHIHEKGLKASLLGFLMSSVKLLPGVQSYIDREKQKVVDKMQSDGKSKREGWKTELPSTGLGTLVLEKMREEKRKDVAWQGKCSGTVYIGGSEIDGHFSLINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKEKSSGGQVCGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVDKDFKADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICLHVDLCLGGFVLPFARELGYPIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMISLGKEGYLKNTKTIMEATKRLQKGIEEIPELYIVGRPDMTIVAFGSNVLDIFEVNDMMSSKGWHLNALQRPNSIHICVTLQHEPIVEDFLADLKESVNTVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181822g00005 545 Pfam Pyridoxal-dependent decarboxylase conserved domain 164 450 IPR002129 GO:0016830|GO:0019752|GO:0030170
Stsc181822g00005 545 SUPERFAMILY PLP-dependent transferases 82 507 IPR015424 -
Stsc181822g00005 545 FunFam Sphingosine-1-phosphate lyase 1 396 508 - -
Stsc181822g00005 545 Gene3D - 142 409 IPR015421 GO:0003824
Stsc181822g00005 545 FunFam sphingosine-1-phosphate lyase 1 145 409 - -
Stsc181822g00005 545 PANTHER - 41 545 - -
Stsc181822g00005 545 FunFam Sphingosine-1-phosphate lyase 1 506 544 - -
Stsc181822g00005 545 Gene3D - 106 542 - -
Stsc181822g00005 545 Gene3D Aspartate Aminotransferase, domain 1 114 508 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181822g00005 Stsc-Chr181822 21460 27117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181822g00005 161 503 Calmodulin-binding Proteins AT5G17330 25.833 6.10e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181822g00005 K01634 - gmx:100794395 953.74