Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181814g00009 ATGGCTGAGAGCACACCCAATCACACACAAACAGTTTCTGGATGGGCTGCTCATGATTCTTCTGGCATCATCACGCCCTACACTTTCAAAAGAAGGGAGAACGGTGTGAATGACGTGACCATACAGATCTTGTACTGTGGGATTTGCCACACTGACATTCACCACGTTAAGAATGAATGGGGCATCACAAGGTACCCTGTTGTTCCCGGCCACGAGATCGTTGGCTTGGTCACCAAGGTGGGCACTCAAGTCAGGGGCTTCAAACAAGGAGACACAGTTGGAGTCGGCTGTTTGGCTGCTTCTTGTTTGGAATGTGAATATTGCAAAACAGATCAGGAAAACTACTGTGACAACCTCCAGTTTACTTACAATGGAGTTTTCTGGGATGGTTCCATCACCTATGGAGGATACTCCGAAATGCTGGTCGCAGATTACAGATACGTGGTACATGTTCCGGAGAATCTGGCAATGGACGCAGCGGCACCTCTGCTGTGTGCTGGAGTGACTGTGTTCACTCCCCTGAAAGACCACGGTTTGGTTGAGTCGCAAGGGAAGAGCATTGGCATTGTTGGCTTGGGTGGTCTTGGACACGTGGCTGTCAAGTTTGCAAAGGCCTTTGGGCACCATGTCACTGTCATAAGCACTTCTCCATCCAAACAAGCTGAGGCTAAGGAGCGTCTGGGAGCGGATGATTTCATCGTGAGCTCGAACCCGAAGCAAATGCAGGGTGCAAAGAGAAGTCTGGATTTCATTTTGGACACTGTTTCAGCTGAGCACTCTCTGCTGCCCCTATTGGAGCTTCTCAAAGTGAATGGCACTCTCTTCATTGTGGGCGCACCCGACAAGCCATTTCAATTGCCCGCATTCCCATTGATCTTTGGTAAGAGATCAGTGAAGGGTGGGATCATTGGAGGAATTAAAGAAACCCAGGAAATGCTGGATGTTTGTGGGAAGCACAACATCACCTGTGACATTGAGTTAATCACTCCAGATAGAATCAACGAAGCTCTTCAACGCCTTGCTAACAATGATGTCCGTTACCGTTTCGTCATTGACATTGCTGCTGCTACCTCTGCCTCTAATTAA 1086 0.4862 MAESTPNHTQTVSGWAAHDSSGIITPYTFKRRENGVNDVTIQILYCGICHTDIHHVKNEWGITRYPVVPGHEIVGLVTKVGTQVRGFKQGDTVGVGCLAASCLECEYCKTDQENYCDNLQFTYNGVFWDGSITYGGYSEMLVADYRYVVHVPENLAMDAAAPLLCAGVTVFTPLKDHGLVESQGKSIGIVGLGGLGHVAVKFAKAFGHHVTVISTSPSKQAEAKERLGADDFIVSSNPKQMQGAKRSLDFILDTVSAEHSLLPLLELLKVNGTLFIVGAPDKPFQLPAFPLIFGKRSVKGGIIGGIKETQEMLDVCGKHNITCDIELITPDRINEALQRLANNDVRYRFVIDIAAATSASN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181814g00009 361 CDD CAD1 14 352 IPR047109 GO:0016616
Stsc181814g00009 361 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Stsc181814g00009 361 SMART PKS_ER_names_mod 16 351 IPR020843 GO:0016491
Stsc181814g00009 361 SUPERFAMILY GroES-like 18 181 IPR011032 -
Stsc181814g00009 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Stsc181814g00009 361 Gene3D - 15 353 - -
Stsc181814g00009 361 Gene3D - 166 323 - -
Stsc181814g00009 361 PANTHER ALDEHYDE REDUCTASE 7 355 IPR047109 GO:0016616
Stsc181814g00009 361 Pfam Alcohol dehydrogenase GroES-like domain 37 150 IPR013154 -
Stsc181814g00009 361 FunFam Cinnamyl alcohol dehydrogenase 166 323 - -
Stsc181814g00009 361 FunFam probable cinnamyl alcohol dehydrogenase 15 172 - -
Stsc181814g00009 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 321 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181814g00009 Stsc-Chr181814 32140 33564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181814g00009 14 354 Monolignol Biosynthesis Gene Families AT2G21730 57.018 4.75e-144 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181814g00009 K00083 - gmx:100820588 625.935