Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181814g00006 ATGGGCAAATTCATTCTTGTATTGGGCAGCTTGATTGGATTATTATTATGCAGTGTGAGAGTGTATGGTTTCTCACCTTCAGGTTGGACCAAGGGGCATGCCACGTTCTATGGTGGTAGTGATGCCTCAGGAACTATGGGAGGAGCATGTGGGTATGGGAATCTGTATAGCGCAGGGTATGGGACGAGAACAGCTGCTTTGAGCACAGCCTTGTTCAACGATGGAGCCTCGTGCGGAGAATGCTACAAGATCATATGCGACTACAATGCAGACTCAAGATGGTGCATCAAAGGAAGATCAGTCACCATAACCGCCACCAACTTTTGCCCTCCTAACTTTGCTCTCCCCAATGACAATGGAGGCTGGTGCAACCCACCTCTTAAGCACTTCGACATGGCTCAGCCTGCTTGGGAAAAGATTGGTATCTACAGAGGAGGCATCGTCCCCGTCTTGTTCCAAAGGGTGCCATGCAAGAAGCATGGAGGGGTTAGATTCACCATAAATGGGAGAGACTACTTTGAGTTAGTGTTGATAAGCAATGTGGGAGGTGCTGGATCCATCCAATCAGTGTCCATAAAGGGATCAAAAACAGGGTGGATGTCTATGTCAAGAAACTGGGGTGCTAACTGGCAATCCAATTCTTATTTGAATGGCCAATCTTTGTCATTCAGAGTCACTACCACTGATGGAGAAACTAAGATTTTCAATGACATTGTTCCATCTAACTGGGGATTTGGCCAAACTTTCTCTAGCCCTCTTCAGTTCTCATAA 771 0.4656 MGKFILVLGSLIGLLLCSVRVYGFSPSGWTKGHATFYGGSDASGTMGGACGYGNLYSAGYGTRTAALSTALFNDGASCGECYKIICDYNADSRWCIKGRSVTITATNFCPPNFALPNDNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMSMSRNWGANWQSNSYLNGQSLSFRVTTTDGETKIFNDIVPSNWGFGQTFSSPLQFS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181814g00006 256 Gene3D - 18 158 IPR036908 -
Stsc181814g00006 256 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Stsc181814g00006 256 PANTHER EXPANSIN-A15 16 251 IPR002963 GO:0009664
Stsc181814g00006 256 SMART dpbb_1 64 152 IPR007112 -
Stsc181814g00006 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Stsc181814g00006 256 Pfam Lytic transglycolase 64 151 IPR009009 -
Stsc181814g00006 256 FunFam Expansin 162 255 - -
Stsc181814g00006 256 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Stsc181814g00006 256 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Stsc181814g00006 256 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Stsc181814g00006 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Stsc181814g00006 256 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Stsc181814g00006 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Stsc181814g00006 256 FunFam Expansin 19 158 - -
Stsc181814g00006 256 CDD DPBB_EXPA_N 28 157 - -
Stsc181814g00006 256 Gene3D - 162 256 IPR036749 -
Stsc181814g00006 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Stsc181814g00006 256 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Stsc181814g00006 256 SUPERFAMILY Barwin-like endoglucanases 28 180 IPR036908 -
Stsc181814g00006 256 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Stsc181814g00006 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Stsc181814g00006 256 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Stsc181814g00006 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Stsc181814g00006 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Stsc181814g00006 256 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Stsc181814g00006 256 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Stsc181814g00006 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Stsc181814g00006 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181814g00006 Stsc-Chr181814 20136 21204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181814g00006 64 255 Expansin Gene Family AT1G20190 81.771 3.18e-120 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181814g00006 - - gmx:548040 486.493