Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181814g00004 ATGCTGGACTCAGTTCTGCTGGCGCTCTTCCTGCCGTGCCTGGGGATGAGCGCCATCTTCATAGTGTACATCTGCCTCCTCTGGTACGCCACCACACACCACCCCAACCTCCCTCCGCCGCCATCCAAGTCCCTCTCCCCAAAGGGCCTCTCCCCCTCCGACCTCGACAAGCTCCCCAAGGTTACCGGCAAGGACCTCGTCTCCCCCACCGAATGCGCTGTGTGCCTCGACGACATCGCCGATGAGCAACCCGTTCGGGTGGTTCCCGGTTGCAACCATGGTTTCCACCTTGAATGTGCCGACACGTGGCTATCGAAGCATCCCCTGTGTCCTATGGTTGAATCAATGGCTTTGGGTGGTGGTGCTTCTAGTTATTACTGTATTCCGAAAGCGAGTGGCAAGTCAAGCTCGTGTGGTTGCAGAATGCAGCAGCAGGTGTCACTCAACAACTTCAACTTGTCTCTTACCAACTCCCAACAAGCATTCACTGCTGCCCTGGATTTGATGCCAGGAGGTGTGAATTCTCCAGTACGTGCCTTCAAATCTGTTGGTGGACAACCAATTTTCATTCACTCCGCAAAGGGATCTCGTATGTGGCTTCTTGGGGCCCTGCAATTATCGGTCATTCACACCCTAAGGTACTTGCAGCATTGGGTGAGACAATGCAAAAAGGAACCAGCTTTGGTGCCCCGTGTCTGCTTGAAAACACTTTAG 714 0.542 MLDSVLLALFLPCLGMSAIFIVYICLLWYATTHHPNLPPPPSKSLSPKGLSPSDLDKLPKVTGKDLVSPTECAVCLDDIADEQPVRVVPGCNHGFHLECADTWLSKHPLCPMVESMALGGGASSYYCIPKASGKSSSCGCRMQQQVSLNNFNLSLTNSQQAFTAALDLMPGGVNSPVRAFKSVGGQPIFIHSAKGSRMWLLGALQLSVIHTLRYLQHWVRQCKKEPALVPRVCLKTL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181814g00004 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 117 IPR013083 -
Stsc181814g00004 237 Pfam Ring finger domain 71 112 IPR001841 -
Stsc181814g00004 237 Gene3D Aspartate Aminotransferase, domain 1 149 201 IPR015422 GO:0003824
Stsc181814g00004 237 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Stsc181814g00004 237 SUPERFAMILY RING/U-box 65 112 - -
Stsc181814g00004 237 SMART ring_2 72 113 IPR001841 -
Stsc181814g00004 237 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 5 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181814g00004 Stsc-Chr181814 3893 10290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181814g00004 1 115 C3H Transcription Factor Family AT5G42200 48.333 1.32e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181814g00004 K19037 - gmx:100817919 180.644