Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181813g00001 ATGGCTGCTGAAAAGCCCACCCTCTCCTTAGAGGAGATCAAGAACGAAACCGTTGATCTGGAACGAATTCCAGTTGAAGAAGTGTTCGAGCAATTGAAATGTACCAGGGAAGGTTTGTCCTCTGCAGAAGGAGCCAGCAGGCTTCAAATATTTGGACCAAACAAGCTAGAAGAGAAAAAGGAAAGCAAATTTCTCAAGTTTCTTGGGTTTATGTGGAATCCCCTGTCATGGGTCATGGAAGCTGCAGCTATTATGGCTATTGCTCTTGCAAATGGTGATGGCAAGCCCCCGGATTGGCAAGATTTTGTTGGTATTGTTTGCTTGTTGGTCATCAACTCCACCATCAGTTTCATTGAAGAAAACAATGCCGGAAATGCTGCTGCAGNNNNNNNNNNTCTTATGGCTGGTCTTGCTCCTAAAACTAAGGTTCTTAGAGATGGCAAGTGGACTGAAGAAGAGGCTGCAATTTTAGTCCCCGGAGATGTCATAAGCATCAAGCTTGGAGACATTGTTCCGGCGGATGCTCGTCTTCTAGAAGGTGATCCCTTAAAGATTGATCAGTCAGCTCTCACCGGAGAGTCTCTTCCGGTGACGAAGAACCCCGGGGATGAAGTCTTCTCAGGCTCAACTTGCAAGCAAGGTGAGATTGAGGCAGTTGTGATAGCAACAGGAGTCCACACATTCTTTGGAAAGGCTGCTCACCTTGTTGACAGCACCAACCAAGTTGGACACTTCCAGAAGGTTCTAACCGCCATTGGAAACTTCTGCATCTGTTCCATTGCGGTTGGTATGCTGGCTGAGATCATTGTCATGTATCCAATTCAGCACAGAAAGTACAGAGATGGAATTGACAATCTTCTTGTTCTCTTGATTGGTGGAATCCCCATTGCCATGCCTACTGTGTTGTCTGTGACAATGGCCATTGGATCTCACAGGCTTTCTCAACAAGGCGCCATCACCAAGCGAATGACTGCCATTGAAGAAATGGCTGGAATGGATGTGCTTTGCAGTGACAAGACAGGAACACTCACACTTAACAAACTTAGTGTTGACAAGAACTTGATTGAGGTCTTTGCTAAAGGTGTGGACAAGGATCATGTGATCCTTCTCGCCGCCAGAGCTTCCAGGACTGAAAACCAGGATGCCATTGATGCTGCTATTGTTGGAATGCTTGCAGACCCCAAAGAGGCAAGAGCTGGAATCAGAGAGGTTCACTTTTTGCCTTTCAATCCTAATGACAAGAGAACTGCTCTGACTTACATTGATGCTGATGGAAACTGGCACCGTTCAAGCAAAGGTGCTCCGGAGCAGATCATGACCTTGTGTAATATGAGGGAAGATGCTAAGAAGAAGGTCCATGCCATTATAGACAAGTTCGCCGAAAGAGGCCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAAAGCAAAGAAAGCCCTGGAGCTCCATGGCAGTTTGTTGGTTTATTGTCACTCTTTGATCCCCCAAGGCATGACAGTGCCGAAACCATTCGCCAGGCTCTTAATCTCGGTGTAAATGTCAAGATGATTACAGGTGATCAACTCGCCATTGCTAAGGAGACAGGCCGAAGACTTGGAATGGGAACAAATATGTACCCTTCTGCTACACTTCTTGGCCAACACAAAGNNNNNNNNNNCGAAAGTATCGCCGCACTTCCCGTCGAAGAGTTGATTGAGAAAGCAGATGGATTTGCTGGAGTCTTTCCAGAGCACAAATATGAGATTGTGAAGAAGCTACAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTGAACGATGCTCCTGCCTTGAAGAAGGCTGATATTGGAATCGCTGTCGCCGACGCCACTGATGCTGCAAGAAGTGCTTCTGATATTGTCTTGACTGAACCCGGATTGAGTGTTATCATTAGTGCTGTCTTAACTAGTAGAGCTATTTTCCAAAGAATGAAGAACTACACGATATATGCAGTGTCTATCACCATCCGTATAGTGTTCGGCTTCATGTTTATCGCGTTGATCTGGAAATTCGACTTCTCTCCTTTCATGGTTCTGATCATTGCCATTCTAAATGATGGGACAATCATGACTATTTCAAAGGACAGGGTTAAGCCATCTCCCTTGCCTGATAGCTGGAAACTGAAGGAAATTTTCGCTACCGGAATTGTTCTTGGAGGTTACTTGGCTCTCATGACTGTTATATTCTTCTGGGCAATGAAAGAAACTACATTCTTCCCTGACAAATTCGGAGTTAGACCTTTGGATCAAAGCCCTGATGAAATGACTGCTGCGTTGTACCTACAAGTTAGTATTGTCAGCCAGGCTCTGATTTTTGTCACGCGTTCGCGCAGCTGGTCTTATGTGGAACGCCCTGGATTGCTTTTGATGAGTGCTTTCCTTATTGCTCAGCTGGTTGCTACATTGATAGCAGTGTATGCAAACTGGGGCTTTGCAAGGATCAAAGGAATTGGTTGGGGTTGGGCTGGAGTCATCTGGCTCTACAGTGTTGTCTTCTATGTTCCTCTCGACTTCATGAAGTTCGCCATTCGCTACATCTTAAGTGGCAAAGCTTGGAACAATCTGCTTGAAAACAAGACTGCCTTCACTACCAAGAAAGACTATGGCAAGGAGGAGAGGGAAGCTCAATGGGCTCTTGCTCAAAGGACCCTTCATGGACTCCAACCACCAGAGACTTCTAACATTTTCAATGAGAAGAACAGCTACAGAGAATTGTCTGAGATTGCTGAACAAGCTAAGAGAAGAGCTGAAGTTGCAAGGCTTCGCGAGCTTCACACGCTTAAGGGACACGTCGAATCCGTGGTGAAGCTGAAAGGTTTGGACATTGACACAATCCAGCAGCACTACACCGTGTAA 2886 0.456 MAAEKPTLSLEEIKNETVDLERIPVEEVFEQLKCTREGLSSAEGASRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGDGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAXXXXLMAGLAPKTKVLRDGKWTEEEAAILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKDHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPNDKRTALTYIDADGNWHRSSKGAPEQIMTLCNMREDAKKKVHAIIDKFAERGLRSLAVARQEVPEKSKESPGAPWQFVGLLSLFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGQHKXXXXESIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGGYLALMTVIFFWAMKETTFFPDKFGVRPLDQSPDEMTAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMSAFLIAQLVATLIAVYANWGFARIKGIGWGWAGVIWLYSVVFYVPLDFMKFAIRYILSGKAWNNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSNIFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181813g00001 961 Gene3D - 333 635 IPR023214 -
Stsc181813g00001 961 SFLD Haloacid Dehalogenase 318 649 - -
Stsc181813g00001 961 FunFam Plasma membrane ATPase 139 223 - -
Stsc181813g00001 961 FunFam Plasma membrane ATPase 348 495 - -
Stsc181813g00001 961 PANTHER CALCIUM-TRANSPORTING ATPASE 21 893 - -
Stsc181813g00001 961 CDD P-type_ATPase_H 38 851 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc181813g00001 961 FunFam Plasma membrane ATPase 487 646 - -
Stsc181813g00001 961 SFLD p-type atpase 318 649 IPR044492 -
Stsc181813g00001 961 Gene3D - 139 223 - -
Stsc181813g00001 961 PRINTS P-type cation-transporting ATPase superfamily signature 336 350 - -
Stsc181813g00001 961 PRINTS P-type cation-transporting ATPase superfamily signature 512 522 - -
Stsc181813g00001 961 PRINTS P-type cation-transporting ATPase superfamily signature 598 617 - -
Stsc181813g00001 961 PRINTS P-type cation-transporting ATPase superfamily signature 621 633 - -
Stsc181813g00001 961 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Stsc181813g00001 961 PRINTS P-type cation-transporting ATPase superfamily signature 490 501 - -
Stsc181813g00001 961 FunFam ATPase 4 plasma membrane-type 583 825 - -
Stsc181813g00001 961 Pfam haloacid dehalogenase-like hydrolase 332 612 - -
Stsc181813g00001 961 Pfam Cation transporter/ATPase, N-terminus 23 85 IPR004014 -
Stsc181813g00001 961 Pfam E1-E2 ATPase 138 315 - -
Stsc181813g00001 961 Gene3D - 348 495 IPR023299 GO:0000166
Stsc181813g00001 961 SUPERFAMILY HAD-like 332 645 IPR036412 -
Stsc181813g00001 961 Gene3D - 98 825 - -
Stsc181813g00001 961 NCBIfam HAD-IC family P-type ATPase 573 687 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181813g00001 961 NCBIfam HAD-IC family P-type ATPase 105 358 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181813g00001 961 Coils Coil 912 932 - -
Stsc181813g00001 961 NCBIfam plasma-membrane proton-efflux P-type ATPase 38 816 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc181813g00001 961 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 857 IPR023298 -
Stsc181813g00001 961 Gene3D - 910 961 - -
Stsc181813g00001 961 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Stsc181813g00001 961 SUPERFAMILY Calcium ATPase, transduction domain A 139 236 IPR008250 -
Stsc181813g00001 961 ProSitePatterns E1-E2 ATPases phosphorylation site. 338 344 IPR018303 -
Stsc181813g00001 961 PRINTS H+-transporting ATPase (proton pump) signature 598 614 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181813g00001 961 PRINTS H+-transporting ATPase (proton pump) signature 770 791 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181813g00001 961 PRINTS H+-transporting ATPase (proton pump) signature 452 470 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181813g00001 961 PRINTS H+-transporting ATPase (proton pump) signature 570 586 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181813g00001 961 PRINTS H+-transporting ATPase (proton pump) signature 629 654 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181813g00001 Stsc-Chr181813 8885 15918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181813g00001 9 961 Primary Pumps ATPases AT4G30190 83.367 0.0 1634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181813g00001 K01535 - gmx:100804422 1738.01