Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181808g00007 ATGCAAATTGCTAGCGATGCTCGTGCTTTGTTGCTCTTACAAATCCGCTTAAGGATTCGAATCCCGCCTTGGGCATGCTTGGAAACATGGCAACAGGCACAATCTTGGGTGCAAGTTGGTTATTGGTATTACAATTCTGGATTTCCCATTCCTCACATAAACGTTTCACTCTTCACTCACCTTGTTTACGCTTTCGCTGATGTAAACTCTTCCACCAGCGAGCTCTCTGTCTCTCCTGATGATCACCGATCCTTCTCTAATTTCACAGCCACTGTGAAGAACAACGACCCCTCTGTCTCTACGCTTCTTTCCATTGGAGGCAGCCGAGCTAACATCTCGCTTGAGGTGTTATCATCCATGATAAGCAGCCCTTCTTCAAGGAACTCCTTCATTCTATCTTCAATAAGAGTCGCCAGGCTTTACGGCTTTCACGGCCTCGATCTCGCATGGCTTCCTATCAATTCAAGCGTTCACATGTACTATGTAGGAATGCTCTTTCAAGAGTGGAGAGCAGCTGCAACGTCTGAGGCAACAAACTCTACCAATCCAGAGTTGATCATAACTGCATTTGTTGAATATAAACCAGGTTACAGTTTCTCGTATTACCCAGTCGAGTCTATTCAAGATAACTTGGATTGGGTCCTTGTTTCGGCTTTTAGCTACCACACACCTGAGAGGGAACCAAATTTTACAGCAGCGCATGCACCCTTGTATGATCCTTCAAGTCAACTCAACACAGATAGTGCTATCAAGCAATGGATTGATTCCGGAATAGCTCCTACCAAGTTGGTTTTGTTGTTACCTTTCTTCGGATTTGCATGGAAACTGAGAAATCCAAGAGACAATGCAATAGGTGCAGCAGCAGCTGGTCCTGCAACTAATCATAGTATAAGAGGGTTCATTACCTATAAGGACATCAAGGATTACATTCAAGGACATGGAGGAACTACTATAACGTATAATGCTACCTATGTGGTGAACTATTGCTCTATTGGATCAACTTGGATAGGTTTTGATGATGTTGATGCCGTCAAAACCAAGGTGTCTTATGCTAGGGAGAAGAACTTACTTGGTTATGCTGTGTGGGAACTGTCCCACGATGACAATTGGGTGCTTTCTACTGCAGCAGCCCAACAGGCTCTAAGTGACCATGATGGTGAGCACTATAGTAGGCGATGGGTGGTCATTTTGATAGCAACTGTCTTATGTGCTCTTCTATTCGGAGTTATGATTTACTACTACTGTAAGAGGCTCTATGAATCAAAGGGTCTGAAAAAGGCAGCTAAAGATGCAGGGAGTTTTCATGGCAGTGTTCCTGATACCCGAGGAGTTCTACGAGATGGTAAGGAAGTAGCAGTGAAAATGTTAGCTAAAACTTCTACACAAGGTTTTGAAGAGTTCAAAAACGAGATAACACTTACTGCAAGACTACAACACGTGAATCTTGTTCGCTTATTGGGTTTCTACATTGATAAGGAAGAACATATGTTGATCTACGAGTACATGCCGAATAAAAGTTTGGACTACTATCTATTTGGTCAGATTCTTTCACTGCTCTAA 1560 0.4308 MQIASDARALLLLQIRLRIRIPPWACLETWQQAQSWVQVGYWYYNSGFPIPHINVSLFTHLVYAFADVNSSTSELSVSPDDHRSFSNFTATVKNNDPSVSTLLSIGGSRANISLEVLSSMISSPSSRNSFILSSIRVARLYGFHGLDLAWLPINSSVHMYYVGMLFQEWRAAATSEATNSTNPELIITAFVEYKPGYSFSYYPVESIQDNLDWVLVSAFSYHTPEREPNFTAAHAPLYDPSSQLNTDSAIKQWIDSGIAPTKLVLLLPFFGFAWKLRNPRDNAIGAAAAGPATNHSIRGFITYKDIKDYIQGHGGTTITYNATYVVNYCSIGSTWIGFDDVDAVKTKVSYAREKNLLGYAVWELSHDDNWVLSTAAAQQALSDHDGEHYSRRWVVILIATVLCALLFGVMIYYYCKRLYESKGLKKAAKDAGSFHGSVPDTRGVLRDGKEVAVKMLAKTSTQGFEEFKNEITLTARLQHVNLVRLLGFYIDKEEHMLIYEYMPNKSLDYYLFGQILSLL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181808g00007 519 Gene3D Glycosidases 53 367 - -
Stsc181808g00007 519 Gene3D - 269 338 IPR029070 -
Stsc181808g00007 519 Pfam Protein tyrosine and serine/threonine kinase 448 511 IPR001245 GO:0004672|GO:0006468
Stsc181808g00007 519 SUPERFAMILY Protein kinase-like (PK-like) 444 515 IPR011009 -
Stsc181808g00007 519 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 36 383 IPR001223 GO:0005975
Stsc181808g00007 519 SMART 2g34 36 367 IPR011583 GO:0008061
Stsc181808g00007 519 SUPERFAMILY Chitinase insertion domain 270 338 IPR029070 -
Stsc181808g00007 519 FunFam Chitotriosidase-1 269 338 - -
Stsc181808g00007 519 PANTHER CHITINASE 34 379 - -
Stsc181808g00007 519 ProSiteProfiles Protein kinase domain profile. 424 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181808g00007 519 Gene3D Phosphorylase Kinase; domain 1 435 502 - -
Stsc181808g00007 519 SUPERFAMILY (Trans)glycosidases 38 371 IPR017853 -
Stsc181808g00007 519 Pfam Glycosyl hydrolases family 18 39 367 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181808g00007 Stsc-Chr181808 22081 24321 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181808g00007 33 378 Glycoside Hydrolase AT4G19810 44.092 1.00e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181808g00007 Glyco_hydro_18 1.8e-59 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181808g00007 - - gmx:100787480 517.309