Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181808g00006 ATGAAGCCAAAAATTTCAGATTTCGGAATGGCAAGAATATTTCTAAAAGGCGAAGAAGAGCAATCACAGACAAACTCGTTGGAACATTGTAATGGCTATGTCCCTCCTGAATACATTAAGAGAGGATCATATTCAATAAAATCTGATGTGTATAGTTTTGGAGTTCTACTTCTACAAATTATAAGTGGTAAAAGGATAGCAAAACTTTATGGTGAGGACGAAAATTTAAGCCTCCTGGAATATGCTTATGAGATGTGGAAAGAAGGAAGATGCATGGAGTTTGTGGATCCTTCACTTGACGACGCAGGTTCACCATGTAAAGTACTGAGGTGCATGCAGATAGCTCTATTGTGTGTGCAGGAAGATGCAAATAATAGGCCATCAATGTTGGAAATTTCTTCTATGTTAAGAAATGAAGACACTCTTTCAGTTCCACACAAACCTGCATTTTCAAGAGGAAAAGATGTCACTGAGCCAGAGCCTGAACCAAATGAATTTAATCGGAAGCATGAACGTGAATGTTCATTGAATGAAGTAACAATATCTGAAGTTGTAGCGCGATAA 564 0.3777 MKPKISDFGMARIFLKGEEEQSQTNSLEHCNGYVPPEYIKRGSYSIKSDVYSFGVLLLQIISGKRIAKLYGEDENLSLLEYAYEMWKEGRCMEFVDPSLDDAGSPCKVLRCMQIALLCVQEDANNRPSMLEISSMLRNEDTLSVPHKPAFSRGKDVTEPEPEPNEFNRKHERECSLNEVTISEVVAR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181808g00006 187 SUPERFAMILY Protein kinase-like (PK-like) 2 145 IPR011009 -
Stsc181808g00006 187 Gene3D Transferase(Phosphotransferase) domain 1 1 148 - -
Stsc181808g00006 187 Pfam Protein tyrosine and serine/threonine kinase 4 135 IPR001245 GO:0004672|GO:0006468
Stsc181808g00006 187 ProSiteProfiles Protein kinase domain profile. 1 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181808g00006 187 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 183 - -
Stsc181808g00006 187 MobiDBLite consensus disorder prediction 147 172 - -
Stsc181808g00006 187 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181808g00006 Stsc-Chr181808 20885 21639 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181808g00006 1 187 Receptor kinase-like Gene Family AT4G11530 42.188 5.27e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181808g00006 PK_Tyr_Ser-Thr 4.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181808g00006 - - gmx:100787480 235.343