Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181808g00005 ATGCTGAAAGGAGATAACACTGATGAGATGAAGATAGTCATTTTGAACACTGCAATTGCACTTGTGGTCCTTTTACAACAAGCACATTCTTGGGTACAAGTTGGTTATTGGTATTACGATTCTGGATTTCCCATTCCTCACATAAACCTTTCCCTCTTCACTCACCTTGTTTATGCTTTCGCCGATGTAAACTCTTCCACCAGCGAGCTCTCTGTCTCTCCTGATGACCACCTATCCTTCTCTTATTTCACAGCCGCCTTGAAGAACAAGAATCCTTCTGTTTCTATGCTTCTTTCCATTGGAGGCAACCGAACTAAAAACATCCTGGTGTTATCATCAATGATAAACAATCCTTCTTCGAGGAACTCCTTCATTCAATCTTCAATAAGAGTCGCCAGGCTGTACGGCTTTCAAGGCCTCGATCTTGCATGGATTCCTACCCCATCAAGCTCTGATATGAACTATATGGGAATGCTATTTCAAGAGTGGAGAGCAGCTGCAAAGTCTGAGGCAATAAACTCTACCTATCCAGAGTTGATGTTAACTGCAGCTGTTTTATATAAACCAGGCATCACTTTTGCTTATTACCCGGTCGAATCTATTCAAAACAACTTGAACTGGGTAACTGTTTTGGCTTGTGACTACTACGGACCACTGTGGGCACCAAATTCTACAAGAGCACCTGCAGCCTTATATGACCCTTCAGGTCAACTCAACACAGATAATGCTATCAAGCAATGGATAGATTCCGGAATAGCTCCTACCAAGTTGGTTTTGTTGTTACCTTTCTTTGGATTTGCCTGGAAACTGAAAAATCCAAGAGACAATGCAATAGGTGCAGCAGCAGCTGGTCCCGCAACTAATGATAGTACAAGAGGGTTAATGTCCTATAAGGACATCAAGGATTATATTCAAGGACATGGAGATGGAGGAACTACTATATTGTATAATTCTACTTACGTGGTAAACTACTGCTCCATTGGATCAACTTGGATAGGTTTTGACGATGTTGGTGCCGTCAAAACCAAGGTGTCTTATGCTAGGGAGAAGAACTTACTTGGTTATGCTGTGTGGGAACTCTCCTACGATGACAATTGGGTGCTTTCTACTGCAGCAGCCCAAGAGGCTATAAGTAACCATGATGGTGAGCACTATAGTGAGCGATTGGTGATCATTTTGATAGCAGCTGTCTTATGTGCTCTTCTATTGGGAGTTATGATTTACTACTTCTGGAAGAGACTCTATGAATCAAAGGGTCTGAAAAAGGCAGCTAAGGATGCAGAGGGTTTTCATGGCAGTCTCAGTGTTCCTGATATCCGAGTCTTCAGCCTTTCGGAAATTAAGTTGGCCACTAAGAGTTTTTCAATTGAGAATAAGCTTGGTCAGGGTGGCTATGGTCCTGTTTATAAGGGAGTTCTACGAGATGGTAAGGAAGTAGCAGTGAAAACGTTAGCACAAACTTCTACACAAGGTTTTGAAGAGTTCAAAAATGAGATAACACTTACTGCAAGACTACAACACATAAATCTTGTTCGCTTATTGGGTTTCTACATTGATAAGGAAGAACATATGTTGATCTACGAGTACATGTCAAATAAAAGTTTGGACTACTATCTATTTGGTCAGATTCTCTCACTGCTCTAA 1644 0.4142 MLKGDNTDEMKIVILNTAIALVVLLQQAHSWVQVGYWYYDSGFPIPHINLSLFTHLVYAFADVNSSTSELSVSPDDHLSFSYFTAALKNKNPSVSMLLSIGGNRTKNILVLSSMINNPSSRNSFIQSSIRVARLYGFQGLDLAWIPTPSSSDMNYMGMLFQEWRAAAKSEAINSTYPELMLTAAVLYKPGITFAYYPVESIQNNLNWVTVLACDYYGPLWAPNSTRAPAALYDPSGQLNTDNAIKQWIDSGIAPTKLVLLLPFFGFAWKLKNPRDNAIGAAAAGPATNDSTRGLMSYKDIKDYIQGHGDGGTTILYNSTYVVNYCSIGSTWIGFDDVGAVKTKVSYAREKNLLGYAVWELSYDDNWVLSTAAAQEAISNHDGEHYSERLVIILIAAVLCALLLGVMIYYFWKRLYESKGLKKAAKDAEGFHGSLSVPDIRVFSLSEIKLATKSFSIENKLGQGGYGPVYKGVLRDGKEVAVKTLAQTSTQGFEEFKNEITLTARLQHINLVRLLGFYIDKEEHMLIYEYMSNKSLDYYLFGQILSLL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181808g00005 547 FunFam Chitotriosidase-1 263 334 - -
Stsc181808g00005 547 Gene3D Glycosidases 48 363 - -
Stsc181808g00005 547 SUPERFAMILY Chitinase insertion domain 264 334 IPR029070 -
Stsc181808g00005 547 Pfam Glycosyl hydrolases family 18 34 363 IPR001223 GO:0005975
Stsc181808g00005 547 Gene3D Phosphorylase Kinase; domain 1 416 529 - -
Stsc181808g00005 547 SUPERFAMILY Protein kinase-like (PK-like) 434 543 IPR011009 -
Stsc181808g00005 547 SMART 2g34 31 363 IPR011583 GO:0008061
Stsc181808g00005 547 PANTHER CHITINASE 29 375 - -
Stsc181808g00005 547 Pfam Protein tyrosine and serine/threonine kinase 455 539 IPR001245 GO:0004672|GO:0006468
Stsc181808g00005 547 CDD GH18_plant_chitinase_class_V 30 369 - -
Stsc181808g00005 547 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 31 379 IPR001223 GO:0005975
Stsc181808g00005 547 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 431 529 - -
Stsc181808g00005 547 Gene3D - 263 334 IPR029070 -
Stsc181808g00005 547 SUPERFAMILY (Trans)glycosidases 33 368 IPR017853 -
Stsc181808g00005 547 ProSiteProfiles Protein kinase domain profile. 454 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181808g00005 Stsc-Chr181808 17696 19658 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181808g00005 9 374 Glycoside Hydrolase AT4G19810 43.089 3.79e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181808g00005 Glyco_hydro_18 2.1e-60 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181808g00005 - - gmx:100787480 583.948