Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181808g00004 ATGGGTGCTAAAAGCTTATTTCAAAATGATCTTCAATCAGATCCTTTCAAGAAGTCTATTTTAGATTGGAACAAACGCATATCCATTATTGAAGGGGTTACTCAAGGACTTCTTTATCTACAAGAATATTCAAGGTTTACAATAATTCATAGAGATATAAAAGCGAGTAACATTTTGTTAGATAGCAAAATGAAGCCAAAAATTTCAGACTTCGGTATGGCAAGAATATTTACAAAAGGTGAAGAAGAAGCTATCACAGACAAACTTGTTGGAACATTTGGTTATGTCCCTCCTGAATACATTACGAAAGGCTCGTATTCAATAAAATCTGATGTGTATAGTTTTGGAGTTCTGCTTCTACAAATTATAAGTGGTAAAAGGATAGCAAAACTTTATGGTGAGCACGAAAATTTAAGCCTAATGGAATATGCCTATGATCTCTGGAAAGAAGGAAGGTCCATGGAGTTTGCGGATCCTATACTTGACGATGCAGGTTCACCATGTAAAGTGTTGAGGTTCATGAATATAGCTCTATTATGTGTGCAGGAAGATGCAAATAATAGGCCATCAATGTTGGAAATTTCTTCTATGTTAAGAAATGAAGACACTCTTTCAGTTCCACACAAACCTGCATTTTCAACAGGAAGAGAAGTAATTGAACCAGAGGCAGAACCAAATGAATTTATTCGGAGGCAAGAACGTGAATTTTCATTAAATGAAGTCACAATATCTGAAGTTGTAGCGAGATAG 750 0.352 MGAKSLFQNDLQSDPFKKSILDWNKRISIIEGVTQGLLYLQEYSRFTIIHRDIKASNILLDSKMKPKISDFGMARIFTKGEEEAITDKLVGTFGYVPPEYITKGSYSIKSDVYSFGVLLLQIISGKRIAKLYGEHENLSLMEYAYDLWKEGRSMEFADPILDDAGSPCKVLRFMNIALLCVQEDANNRPSMLEISSMLRNEDTLSVPHKPAFSTGREVIEPEAEPNEFIRRQEREFSLNEVTISEVVAR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181808g00004 249 Gene3D Transferase(Phosphotransferase) domain 1 6 209 - -
Stsc181808g00004 249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Stsc181808g00004 249 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181808g00004 249 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 14 245 - -
Stsc181808g00004 249 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 206 - -
Stsc181808g00004 249 SUPERFAMILY Protein kinase-like (PK-like) 15 207 IPR011009 -
Stsc181808g00004 249 SMART serkin_6 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181808g00004 249 Pfam Protein kinase domain 17 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181808g00004 Stsc-Chr181808 16544 17481 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181808g00004 14 249 Receptor kinase-like Gene Family AT4G11460 45.935 3.02e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181808g00004 Pkinase 8.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181808g00004 - - gmx:100787480 328.176