Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181808g00002 ATGAAGGTCATAGCCGCCTATCTCCTCGCCGTTCTCGGCGGTAACACTTGCCCTTCCGCAGCCGACATCAAGGATATCCTCGGCTCCGTTGGAGCTGAAGCTGATGATGATGGAATAAAGCTCCTTTTGTCTGAAGTTGAAGGCAAAGACATAACAGAGGTCATTGCCGCCGGTAGGGAAAAGCTTGCATCTGTGCCTGCCGGTGGTGGCGGTGCTGTTGCCGTTGCCGCTGCTCCTAGCGGAGGTGGCGCTGCTGCTCCCGCAGCCGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAGGAATCAGATGATGATATGGGATTCAGTCTCTTTGACTAA 342 0.538 MKVIAAYLLAVLGGNTCPSAADIKDILGSVGAEADDDGIKLLLSEVEGKDITEVIAAGREKLASVPAGGGGAVAVAAAPSGGGAAAPAAESKKEEKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181808g00002 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Stsc181808g00002 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Stsc181808g00002 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Stsc181808g00002 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Stsc181808g00002 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
Stsc181808g00002 113 Gene3D - 1 59 IPR038716 -
Stsc181808g00002 113 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181808g00002 Stsc-Chr181808 11573 12498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181808g00002 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 70.796 1.67e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181808g00002 K02943 - vvi:100241445 132.88