Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181800g00001 ATGCGAAAAACTCTGCTTGAGGTTCCTGGATTGTTGGTACTGGATGAAGGACACACTCCAAGAAATCAGACTAGTCAGATTTGGAAGGTTCTTTCTGAAATTCGGACTCAGAGAAGAATCATCCTTTCAGGGACTCCTTTCCAGAACAATTTTCTGGAGCTCTACAATACAATCCGTGTGGTTAGACCGTCTTTTCCGGACACCATACCGCCGGATCTTAAAAAGTTCTGCCAAAGAAGATTAATGCAAGAGAAGAGGAAAGAGCCTAAAGGTTTCAGTTGGGAACCAGATTCTTATGTGAAAACCGAGAATCTGAATGATGAAAACATAAAGCAGTTGAAGCAGCTTATGGATCCATTTGTCCATGTTCACAAAGGCAGTATTCTTCTTAAGACTCTTCCTGGCTTGAGAGATTGTGTGGTGACATTGATGCCGGACGAGTTGCAGAAATCACTTCTTGAGGGAATTGAAGGACATCTGAATACATTGACTTATGATAACAAGTTGGCATTGGTATCTGTCCATCCATCCCTTTTCCTTTTCTGCAGCCTTTCAGCGAAGGAAGAATCTCTTGCTGACAAGGAACACTTGGAAGGACTTAAACTGAATCCGAATGTTGGAGTCAAAACAAGATTCTTGGTGGAGTTTGTAAGGATCTGCAACGCCATGAATGAGAAAGTCCTTGTGTTCAGCCAGTTCCTTCATCCCTTGACTTTAATCATGGAGCAATTAAAGTCAGTTTTTAATTGGATTGAGAAGAAAGAAGTATTCTACGTAAACGGCAGGCTTGATACGAAAGAAAGGCAGTCACTCATTGATTCCTTTAATGATCCAAAAGGCCAAGCAAAGATCTTGCTTGCATCCACAAAAGCTTGTAATGAAGGAATCAATTTGGTCGGAGCTTCGAGGGTGGTGCTGCTAGATGTTGTTTGGAACCCCTCGGTCGAAAGGCAAGCTATTAGCCGTGCTTATAGGATCGGCCAAACGAAGGTGGTCTACACTTACCATCTCATAACACATGGGACGACCGAGTACTCGAAGTACTGCCTTCAGGCCAAGAAGGACCGTTTGTCTGAACTGGTCTTTTCAGCAAGAGAAACTGAAGAGGATGAGCCCAAGAGTTCTGCCGAGGAGTTCGAGGATGAAGTTCTCGATAAGATGGTGCACCATGACAAACTGAAGGACTTGTTTGGTGGCTGTGTGGTGCAGCGAAAGGAACGTGATTTAGTTGAGAATTTCGGTGAACAAGTCACGGAGGAATGGGACCAGCAATGCAAGATCAAGTGA 1287 0.4375 MRKTLLEVPGLLVLDEGHTPRNQTSQIWKVLSEIRTQRRIILSGTPFQNNFLELYNTIRVVRPSFPDTIPPDLKKFCQRRLMQEKRKEPKGFSWEPDSYVKTENLNDENIKQLKQLMDPFVHVHKGSILLKTLPGLRDCVVTLMPDELQKSLLEGIEGHLNTLTYDNKLALVSVHPSLFLFCSLSAKEESLADKEHLEGLKLNPNVGVKTRFLVEFVRICNAMNEKVLVFSQFLHPLTLIMEQLKSVFNWIEKKEVFYVNGRLDTKERQSLIDSFNDPKGQAKILLASTKACNEGINLVGASRVVLLDVVWNPSVERQAISRAYRIGQTKVVYTYHLITHGTTEYSKYCLQAKKDRLSELVFSARETEEDEPKSSAEEFEDEVLDKMVHHDKLKDLFGGCVVQRKERDLVENFGEQVTEEWDQQCKIK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181800g00001 428 Gene3D - 3 134 IPR038718 -
Stsc181800g00001 428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 212 368 IPR001650 -
Stsc181800g00001 428 Pfam SNF2-related domain 12 151 IPR000330 GO:0005524|GO:0140658
Stsc181800g00001 428 Pfam Helicase conserved C-terminal domain 212 327 IPR001650 -
Stsc181800g00001 428 CDD SF2_C_SNF 206 338 - -
Stsc181800g00001 428 Gene3D - 135 412 IPR027417 -
Stsc181800g00001 428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 64 IPR014001 -
Stsc181800g00001 428 SMART helicmild6 242 327 IPR001650 -
Stsc181800g00001 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 367 IPR027417 -
Stsc181800g00001 428 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 408 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181800g00001 Stsc-Chr181800 16754 18161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181800g00001 12 87 RAD5 or RAD16-like Gene Family AT5G05130 32.895 5.77e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc181800g00001 SNF2_N 1e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181800g00001 K10875 - qsu:112002935 544.273