Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181799g00001 ATGGCGCCTCATATTATTATGATCTCGTCATGTCTTATTTGGAATCTTTATTGCATGCTGGTTCTCATCAGCGGAGGTAGTGTTATTAGTGTCCCACTAGTTCAAGCTAAATCTTGGCTTAATGCTCATGCAACGTTTTATGGGGCTAATCAAAGTCCCTCTAGCCTTGGGGGAGCTTGCGGTTATGACAACACCATTCATGCTGGGTTTGGTGTCAACACAGCAGCAGTGAGCACCATGCTCTTCAGAGGTGGTGAGGTTTGTGGAGCATGCTACCAACTCATATGTGACTACCGGGTCGACCCGAAATGGTGCCTCCGGGGGCGAAGCGTGACTGTAACTGCCACCAATTTTTGCCCTCCCAACAACCAAGGAGGGTGGTGTGATCCACCTCACCATCACTTTGATTTGTCCCTTCCTTCCTTCTTGCGCATTGCAAGACAAGGCAATGAAGGCATTGTTCCCGTTCTCTATACAAGGGTTCCATGCAAAAGAAGAGGTGGAGTGAGATTCACGTTGAGGGGGCAATCAAATTTCAACATGGTGATGATATCCAATGTTGGAGGCAGTGGGGACGTGAAGGCCGTCTGGATCAAAGGATCCAGAGGCCGCGCATCCTGGCTGCCTATGCACCGCAACTGGGGAGCCAACTGGCAAAGCAGTGCGGATCTCCGGAACCAGAGGCTGTCCTTTAAGCTAACATTGGCGGATGGGAATACACTGATGTGCCTCAATGTTGTTCCTTCTAGTTGGAGGTTTGGACAGACATTTTCATCAAGAAACCAGTTCTCTTGA 795 0.4931 MAPHIIMISSCLIWNLYCMLVLISGGSVISVPLVQAKSWLNAHATFYGANQSPSSLGGACGYDNTIHAGFGVNTAAVSTMLFRGGEVCGACYQLICDYRVDPKWCLRGRSVTVTATNFCPPNNQGGWCDPPHHHFDLSLPSFLRIARQGNEGIVPVLYTRVPCKRRGGVRFTLRGQSNFNMVMISNVGGSGDVKAVWIKGSRGRASWLPMHRNWGANWQSSADLRNQRLSFKLTLADGNTLMCLNVVPSSWRFGQTFSSRNQFS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181799g00001 264 Pfam Lytic transglycolase 74 158 IPR009009 -
Stsc181799g00001 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Stsc181799g00001 264 PRINTS Expansin signature 98 109 IPR002963 GO:0009664
Stsc181799g00001 264 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Stsc181799g00001 264 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Stsc181799g00001 264 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Stsc181799g00001 264 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Stsc181799g00001 264 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Stsc181799g00001 264 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Stsc181799g00001 264 SMART dpbb_1 74 158 IPR007112 -
Stsc181799g00001 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 259 IPR007117 -
Stsc181799g00001 264 Pfam Expansin C-terminal domain 169 248 IPR007117 -
Stsc181799g00001 264 CDD DPBB_EXPA_N 39 163 - -
Stsc181799g00001 264 PANTHER EXPANSIN-A15 31 262 IPR002963 GO:0009664
Stsc181799g00001 264 Gene3D - 168 264 IPR036749 -
Stsc181799g00001 264 SUPERFAMILY Barwin-like endoglucanases 30 186 IPR036908 -
Stsc181799g00001 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 168 IPR007112 -
Stsc181799g00001 264 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Stsc181799g00001 264 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Stsc181799g00001 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Stsc181799g00001 264 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Stsc181799g00001 264 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Stsc181799g00001 264 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Stsc181799g00001 264 Gene3D - 27 164 IPR036908 -
Stsc181799g00001 264 SUPERFAMILY PHL pollen allergen 165 259 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181799g00001 Stsc-Chr181799 20452 23210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181799g00001 27 262 Expansin Gene Family AT3G15370 61.278 1.28e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181799g00001 - - ahf:112735861 486.493