Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181798g00003 ATGGCCATGGAGGTTGACCCTAATGTCGAGTCAGCACCCTTCTCCTTCTCCTTCTGGAAACCCCTTCGTCGTACCTTCAACCCTGACTCTCCTTTCTTCTCTTCTGGAAACCTCCAACGTGAACTCCTCGCCAAACAGGTTGCCTTGGAATTAACGGAAGAGCAGGAACAACTTGAGAATTGCATACAAGAAGATGGAAGGGAAGTCTTTTGCCCGATTGTTGGTTGTGGAACACGCCTGACTTCAATCGAGGACTTTGAAAATCACTATAATGCTAGGCATAGCGCATCATGTTCAGTGTGTTCCGCAGTCTACCCAACTTCCCGTCTGCTCAGCATACACTTATCTGAAGTTCATGATTCTTTCTTTCAAGCAAAACTTGCACGCGGCTATGATGTGTATGAATGCTTGGTTGAAGGCTGTGGTTTGAAATTCAAAACCTATGGTAGCAGGCAGCAGCATCTGGTTGACAAGCATAAATTTCCGACCTCATTCGAATTTTTCAAGAAGTCTCGGCCATCAAAGAAACATAGGTTAAAGTCTCAGCGCAAGAAATCTTTTCAGAAAGAGGATGCATCAGAAACAATGGAAGTCGAAAATGCAGCCATAGATGACCTCACTTCAGCAGTCTCTAGAATGAGCACTTCAGACTCTACTCCTTCCTCTATCAGCTTTGGTCGTCGCAACAAAGGGTTGACATTTGCTCCTCGCTTTGTTCAGCGAGCAGCCCATCAAAGAGATAATTAG 747 0.4525 MAMEVDPNVESAPFSFSFWKPLRRTFNPDSPFFSSGNLQRELLAKQVALELTEEQEQLENCIQEDGREVFCPIVGCGTRLTSIEDFENHYNARHSASCSVCSAVYPTSRLLSIHLSEVHDSFFQAKLARGYDVYECLVEGCGLKFKTYGSRQQHLVDKHKFPTSFEFFKKSRPSKKHRLKSQRKKSFQKEDASETMEVENAAIDDLTSAVSRMSTSDSTPSSISFGRRNKGLTFAPRFVQRAAHQRDN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181798g00003 248 ProSitePatterns Zinc finger C2H2 type domain signature. 136 159 IPR013087 -
Stsc181798g00003 248 SMART c2h2final6 96 119 IPR013087 -
Stsc181798g00003 248 SMART c2h2final6 134 159 IPR013087 -
Stsc181798g00003 248 SMART c2h2final6 69 94 IPR013087 -
Stsc181798g00003 248 PANTHER UNCHARACTERIZED 15 242 IPR039258 -
Stsc181798g00003 248 ProSitePatterns Zinc finger C2H2 type domain signature. 98 119 IPR013087 -
Stsc181798g00003 248 MobiDBLite consensus disorder prediction 177 198 - -
Stsc181798g00003 248 MobiDBLite consensus disorder prediction 209 228 - -
Stsc181798g00003 248 Coils Coil 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181798g00003 Stsc-Chr181798 15565 17999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181798g00003 2 241 C2H2 Transcription Factor Family AT5G14140 60.400 1.84e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181798g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181798g00003 - - ahf:112697187 434.491